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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGGCTATTGATCTCATGGCTGATGTTGTAGAAGAGGAGGAATTTAACAAAATGAATGCTAGAAATATTGCAATGGTTTTTGCTCCAAACATGACTCAGgtatgctcacatacacattggatgttaaaattgtcagtgtttgcttaatgttctatttgtatttgttggtttttatgtgaaattttttttattaaaagga...

Basic information

species Glycine max
transcript GLYMA10G02720.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02720.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os12g34840.1 (Oryza sativa), 5'ss of exon 4
CTGGGCTATTGATCTCATGGCTGATGTTGTAGAAGAGGAGGAATTTAACAAAATGAATGCTAGAAATATTGCAATGGTTTTTGCTCCAAACATGACTCAGgtatgctc---------acatacacattggatgttaaaat-tgtcagtgtttgcttaatgttctatttgtatttg---ttggtttttatgtgaaattttttttattaaaagga------
 |||||| |||| || |||||||| ||||| |||||||||||  | ||||| ||||||||||| || || || ||||| ||||| || |||||||||||||||  |||         |  |   ||  ||||      ||  ||  ||| ||  | | |  | |   |  |   |    ||  |    | ||   |||| ||| |       |      
TTGGGCTGTTGAACTGATGGCTGACGTTGTCGAAGAGGAGGAGCTGAACAAGATGAATGCTAGGAACATAGCCATGGTGTTTGCCCCCAACATGACTCAGgtaatctccatttctgtaattttgcaggggatcaggtgatacgtaggtgattcttcagtactttccctacaaaagaacctgactgaggtttgctcttttgtttttgggttctatgctag

upper sequence: GLYMA10G02720.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G143253_T01 (Zea mays), 5'ss of exon 4
CTGGGCTATTGATCTCATGGCTGATGTTGTAGAAGAGGAGGAATTTAACAAAATGAATGCTAGAAATATTGCAATGGTTTTTGCTCCAAACATGACTCAGgtatgctcacatacacattggatgtta-aaattgtcagtgtttgcttaatgttctatttgtatttgttggtttttatgtgaaattttttttattaaaagga
 ||||   |||| ||||||||||||||||| || || ||||| |  || || |||||||| |||||| |||| ||||||||||| ||||| ||||| |||||||   |   |   ||     | | | | || |||     ||| ||  |||   | ||||  |     |    |    ||||||||  |   || |    
TTGGGTCGTTGAGCTCATGGCTGATGTTGTTGAGGAAGAGGAGTCGAATAAGATGAATGCAAGAAATGTTGCCATGGTTTTTGCACCAAATATGACACAGgtatttccttcttgccaagtcctctaacacatcgtcgac-cttgtttgctgtgacacttgtgctaacaagaacat---cgaaattttcctccatacag---

upper sequence: GLYMA10G02720.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G323936_T01 (Zea mays), 5'ss of exon 3
CTGGGCTATTGATCTCATGGCTGATGTTGTAGAAGAGGAGGAATTTAACAAAATGAATGCTAGAAATATTGCAATGGTTTTTGCTCCAAACATGACTCAGgta------tgctcacatacacattggatgttaaaa--ttgtcagtgtttgctta-atgttctatttgtatttgttggtttttatgtgaaattttttttattaaaagga------------------------------
 |||||| | || || ||| |||||||||| |||||||||||  | ||||| ||||||||||| ||  | || ||||| ||||| || |||||||| ||||||      |  |     |  ||| |||   ||  |  |  ||  | |   | |  |  |   ||         |||      || || |  |     |  |  ||                                 
TTGGGCTGTCGAGCTGATGTCTGATGTTGTCGAAGAGGAGGAGCTCAACAAGATGAATGCTAGGAACGTAGCCATGGTGTTTGCCCCCAACATGACACAGgtagtttactattattgcaggcataggactataggaggtgttccatatgcacatgtacttctcatacaacaaaattgcgagaaatctgtagatcaccctgcttcaacagctaaatttacttttttttgttctatgttag

upper sequence: GLYMA10G02720.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G03100.1 (Arabidopsis thaliana), 5'ss of exon 3
CTGGGCTATTGATCTCATGGCTGATGTTGTAGAAGAGGAGGAATTTAACAAAATGAATGCTAGAAATATTGCAATGGTTTTTGCTCCAAACATGACTCAGgtatgctcacatacacattggatgttaaaattgtcagtgtttgcttaatgttctatttgtatttgttggtttttatgtgaaattttttttattaaaagga
 |||||| ||||||| |||||||||||||| ||||| || || | ||||||||||||||| || ||||| || |||||||||||||| || ||||||||||||     ||| |   |     |||| ||    | ||  |   || | |  | || |   ||||| |  ||    | |  || | |              
TTGGGCTGTTGATCTTATGGCTGATGTTGTTGAAGAAGAAGAGTCTAACAAAATGAATGCAAGGAATATAGCCATGGTTTTTGCTCCTAATATGACTCAGgtaaaa--acaaagttaacctttgttcaatgaataagaatc-actgagtagt-tactaacatttgattcttgcattctctaactgtag------------

upper sequence: GLYMA10G02720.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0104g01120.t01 (Vitis vinifera), 5'ss of exon 3
CTGGGCTATTGATCTCATGGCTGATGTTGTAGAAGAGGAGGAATTTAACAAAATGAATGCTAGAAATATTGCAATGGTTTTTGCTCCAAACATGACTCAGgtatgctcacatacacattggatgttaaaattgtcagtgtttgcttaatgttctatttgtatttgttggtttttatgtgaaattttttttattaaaagga-----
||||||||||||||| |||||||||||||| || |||||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||         | |||  || || ||| | ||    |||   ||||| | |  |   ||   ||    |  ||   |    |||||| ||  |         
CTGGGCTATTGATCTTATGGCTGATGTTGTTGAGGAGGAGGAGTTCAACAAAATGAATGCGAGAAATATTGCAATGGTTTTTGCTCCAAATATGACTCAGgt-tg---------atattaaatcttgaaaatttcttgttttagctaatgctttggtc-catggatttcaataaatagaactccttttttgtttgatttcaccag

upper sequence: GLYMA10G02720.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S13_243V6.1 (Physcomitrella patens), 5'ss of exon 4
CTGGGCTATTGATCTCATGGCTGATGTTGTAGAAGAGGAGGAATTTAACAAAATGAATGCTAGAAATATTGCAATGGTTTTTGCTCCAAACATGACTCAGgtatgctc------acatacacattggatgttaaaattgtcagtgtttgcttaatgttctatttgtatttgttggtttttatgtgaaattttttttattaaaagga-------------------------
||||||| |  || | ||||||||||| ||  |||| || | | | ||||| ||||| ||| | |||||||||||||| |||||||| || |||||||||||| |         || | | | ||||||| |   | | | | |      |||   || | |||  | |  |    |  | |  |||   |   | |     |  |                         
CTGGGCTGTCAATTTGATGGCTGATGTAGTCCAAGACGAAGTAGTCAACAAGATGAACGCTCGCAATATTGCAATGGTCTTTGCTCCTAATATGACTCAGgtaagtcatcttcgacctcccccttggatgctggcact-tgaatacc-atttacgatttttttttcactcttcacctcattttggaacgctaactgaagcctaacacctgtttcgacctctatatctgcag

upper sequence: GLYMA10G02720.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S1_829V6.2 (Physcomitrella patens), 5'ss of exon 5
CTGGGCTATTGATCTCATGGCTGATGTTGTAGAAGAGGAGGAATTTAACAAAATGAATGCTAGAAATATTGCAATGGTTTTTGCTCCAAACATGACTCAGgtatgct-cacatacacattggatgttaaaattgtcagtgtttgcttaatgttctatttgtatttgttg-gtttttatgtgaaattttttttattaaaagga----------------------------------------------------------------------
|||||| ||| |  | ||||| ||||| || ||   ||||   || ||||| ||||||||| | |||||||||||||| || ||||| || ||||| ||||||||   ||| |   || |||    ||    |   ||   |||  |   |     |     ||| |    |  | |    | |||  || |  |||||||                                                                       
CTGGGCCATTAACTTGATGGCCGATGTCGTGGAGCTGGAGTCTTTCAACAAGATGAATGCTCGCAATATTGCAATGGTATTCGCTCCTAATATGACACAGgtatggagcacttctgcagtggtctctatctgtagaagctgttgtatggcgaatggtcctcttttttcacatggtaactcaagattgcttatcctaaaaggtggttttccgttagcatgttatgtgtcaatgaaggttatccctttactgattcatatttactgccctgcag

upper sequence: GLYMA10G02720.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S107_15V6.1 (Physcomitrella patens), 5'ss of exon 5
CTGGGCTATTGATCTCATGGCTGATGTTGTAGAAGAGGAGGAATTTAACAAAATGAATGCTAGAAATATTGCAATGGTTTTTGCTCCAAACATGACTCAGgtat-gctcacatacacattgga-------tgttaaaattg--tcagtgtt-----tgcttaatgttctattt---gtatttgttggtt-tttatgtgaaattttttttattaaaagga--------------------------------------------------------------------------
|||||| ||  | |||||||| ||||| || ||   ||||   |  ||||| ||||||||| | || ||||| |||||||||||||| |||||||| ||||||| |  ||| |   |  |||        | || ||| |   | || | |     ||  ||  ||  | | |   || |||  |  |  | | ||   | | |||     |  ||||                                                                           
CTGGGCCATCAACCTCATGGCGGATGTGGTGGAGCTGGAGTCTTACAACAAGATGAATGCTCGCAACATTGCTATGGTTTTTGCTCCGAACATGACACAGgtatagagcacctcttcggtggtctctttcttttgaaactagtttagagctaaaactgtgtagcgtgttgtctcccgtgttttctcatgatctttgcacattatttcagcctcgaaggtcgtttgttgttagttggtgttcgatctgttgacgaaggtcatctctttgataatttgagtttcttgccctgcag

upper sequence: GLYMA10G02720.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S159_36V6.1 (Physcomitrella patens), 5'ss of exon 5
CTGGGCTATTGATCTCATGGCTGATGTTGTAGAAGAGGAGGAATTTAACAAAATGAATGCTAGAAATATTGCAATGGTTTTTGCTCCAAACATGACTCAGgtatgc--tcacatacacattggatgtt-----aaaattgtcagtgtttgctta------------atgttctatt-tgtatttgttggtttttatg--tgaaattttttttattaaaagga----------------------------------------------------------------
||||||| |  | || ||||| |||||||| ||  | ||||   | ||||||||||||||  |||||||||||||||| ||||| || |||||||| ||||||||   |  |      ||||   |       ||| |||| |   ||| ||||            |  |||  |  |||| ||    |  | |  |  |  | || |   |  |  |||||                                                                
CTGGGCTGTCAACCTGATGGCCGATGTTGTCGAGCACGAGGTTCTCAACAAAATGAATGCACGAAATATTGCAATGGTGTTTGCACCTAACATGACGCAGgtatgtgatgtcgctgcaattgtgcgcctccccaaacttgtgacacttttcttaccagacttgtagagattcggtcctgtagttagcagactctccgactagatttctacgtgatctaaggaagtatttgtgttaagcttgttatatgaagtgaataacatattaactatgattcattacttgcag

upper sequence: GLYMA10G02720.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ22564 (Selaginella moellendorffii), 5'ss of exon 4
CTGGGCTATTGATCTCATGGCTGATGTTGTAGAAGAGGAGGAATTTAACAAAATGAATGCTAGAAATATTGCAATGGTTTTTGCTCCAAACATGACTCAGgtatgctcacatacacattggatgttaaaattgtcagtgtttgcttaatgttctatttgtatttgttggtttttatgtgaaattttttttattaaaagga
||||||  |  |||||||||| || || |   | |||||||  |  ||||| |||||  |  | || || ||||||||||||||||| ||||||||||||||| | ||   |   |||| | || |    || |   | | |  |   |  | |||||   |||| ||                                
CTGGGCGCTGAATCTCATGGCCGACGTCGCCCAGGAGGAGGCGTCAAACAAGATGAACTCCCGGAACATCGCAATGGTTTTTGCTCCCAACATGACTCAGgtacgttcctct-ttcatttggtgcttgg-tttttgttttcttttctgtaatgtatttccttttgctgtcccag--------------------------

upper sequence: GLYMA10G02720.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ12967 (Selaginella moellendorffii), 5'ss of exon 4
CTGGGCTATTGATCTCATGGCTGATGTTGTAGAAGAGGAGGAATTTAACAAAATGAATGCTAGAAATATTGCAATGGTTTTTGCTCCAAACATGACTCAGgtatgctcacatacacattggatgttaaaattgtcagtgtttgcttaatgttctatttgtatttgttggtttttatgtgaaattttttttattaaaagga
||||||  |  |||||||||| || || |   | |||||||  |  ||||| |||||  |  | || || ||||||||||||||||| ||||||||||||||| | ||   |     |||| | ||    ||     ||||| ||   |  | |||||   |||| ||                                
CTGGGCGCTGAATCTCATGGCCGACGTCGCCCAGGAGGAGGCGTCAAACAAGATGAACTCCCGGAACATCGCAATGGTTTTTGCTCCCAACATGACTCAGgtacgttcctctttcatttggttcttggtttttgttttgttttct--gtaatgtatttccttttgctgtcccag--------------------------