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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGGCACAAGAAGTAGCCGAGGGAAAACTAAACGAACATTTTCCTCTCGTTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttagttactagttaattagtgcttccttattcctactaatattttttgagctgcacctaacgttgatgttctgcatacaataatactatagctcacaat...

Basic information

species Glycine max
transcript GLYMA10G02040.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02040.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G348729_T01 (Zea mays), 5'ss of exon 6
AGCGGCACAAGAAGTAGCCGAGGGAAAACTAAACGAACATTTTCCTCTCGTTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttagt-tactagttaattagtgctt---ccttattcctactaatattttttgagctgcacctaacgttgatgttctgcatacaataatactatagctcacaat
 || ||  | || || || ||||||||  || | || || || || || ||| | |||||||||||||||||||| ||||| ||||||||||| || |||||| || | |||  ||   | |  ||   |   |   || | |  |    |  |  |  |  ||   | | ||||  |  |  |||  || |       | |  
GGCAGCTGAGGAGGTCGCAGAGGGAAAGTTAGATGATCACTTCCCACTTGTTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgttggtgtcctacatatccaatatttttactccaaatcttccataaaacgtcaattttaaagtagtatagctgtt--gtttggaatggtagtccctgctaaa--

upper sequence: GLYMA10G02040.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G348729_T01 (Zea mays), 5'ss of exon 5
AGCGGCACAAGAAGTAGCCGAGGGAAAACTAAACGAACATTTTCCTCTCGTTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttagt----tactagttaattagtgcttccttattcctacta-atattttttgagctgcacctaacgttgatgttctgcatacaataatactatagctcacaat
 || ||  | || || |  ||||||||  |  | || || || || || |||   |||||||||||||||||||| ||||| ||||||||||| || |||||| ||    |||   |  | || |  | | | |   || | | | |    |  |  |  |  ||   | | ||||  |  |  |||  || |    ||   || 
GGCAGCTGAGGAGGTCGTAGAGGGAAAGTTGGATGATCACTTCCCACTTGTTACCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgttggtgtcctacacatccaatatttttacttcaaatcttccataaaaacgtcaattttaaagtagtatagttgtt--gtttggaatggtagtcc--ctgctaa-

upper sequence: GLYMA10G02040.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G010823_T01 (Zea mays), 5'ss of exon 3
AGCGGCACAAGAAGTAGCCGAGGGAAAACTAAACGAACATTTTCCTCTCGTTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttagt-tactagttaattagtgcttccttattcctactaatattttttgagctgcacctaacgttgatgttctgcatacaataatactatagctcacaat------
 || ||  | || || || ||||||||  |  | || || || || || ||| | |||||||||||||||||||| ||||| ||||||||||| || |||||  || | |||   |   | |  ||     || || | ||| ||   | |    || | ||  || | ||  |  |     |  |  | |   |  ||||      
GGCAGCTGAGGAGGTCGCAGAGGGAAAGTTGGATGATCACTTCCCACTTGTTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcctacacacccaatattt-----ttacttcaaatcttccataaaa-acatc-aattttaaagtagtatagctgttttttttttgaatggcaatccctgc

upper sequence: GLYMA10G02040.2 (Glycine max), 5'ss of exon 3
lower sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 4
AGCGGCACAAGAAGTAGCCGAGGGAAAACTAAACGAACATTTTCCTCTCGTTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttagttactagttaattagtgcttccttattcctactaatattttttg-agct-gcacctaacgttgatgttctgcatacaataatactatagctcacaat---------------------
||| || || |||||||| |||||||| || || || ||||| || || ||||| ||||||||||| ||||| ||||| ||||| ||||||||||| ||||| | ||  | |    ||          | ||     |   ||| | |  |||| ||  | |  |  |   |||||  ||   |  | |  |  ||                           
AGCTGCTCAGGAAGTAGCTGAGGGAAAGCTCAATGATCATTTCCCCCTTGTTGTCTGGCAAACTGGTAGTGGGACTCAGAGTAATATGAATGCTAATGAGgtaatttctttgcagtttttgagacatctgttgaggatctcattgtatatagctagctacaagagaaggctttctgtttatgttttttcattttcttttggccttgttatttgctcttcacag

upper sequence: GLYMA10G02040.2 (Glycine max), 5'ss of exon 3
lower sequence: AT5G50950.3 (Arabidopsis thaliana), 5'ss of exon 2
AGCGGCACAAGAAGTAGCCGAGGGAAAACTAAACGAACATTTTCCTCTCGTTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttagttactagttaattagtgcttcct---tattcctactaatattttttgagctgcacctaacgttgatgttctgcatacaataatactatagctcacaat
||| |||||||||||||| || ||||| || || || ||||| ||||| ||||||||||||||||| ||||| || || ||||| ||||||||||| |||||   |||   |        | | |  |    | ||||||  |  |  |   ||  |      |     |  |  | ||  |      || |||  |||   |
AGCTGCACAAGAAGTAGCAGAAGGAAAGCTCAATGATCATTTCCCTCTTGTTGTATGGCAAACTGGTAGTGGGACGCAGAGTAATATGAATGCTAATGAGgtaccttatatgcatggagatacattttgtacaatcctacacaagtgctaccagtggtg---gatcccaaaatatttcaatcggaggaacaatatttcatcgt

upper sequence: GLYMA10G02040.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 5'ss of exon 4
AGCGGCACAAGAAGTAGCCGAGGGAAAACTAAACGAACATTTTCCTCTCGTTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttagttactagttaattagtgcttccttattcctactaatattttttgagctgcacctaac--gttgatgttctgcatacaataatactatagctcacaat
||| || ||||||||  | |||||||||||||| || |||||||| |||||  |||||||||||||||||||||||||||||||||||||||| || ||||| ||   |   |||  |||       |  |      | |   |  || || |  |   |    |    | ||  |  | | ||   | | |     | |  
AGCAGCCCAAGAAGTGTCAGAGGGAAAACTAAATGATCATTTTCCGCTCGTCATATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCCAATGAGgtaaggatcggtttatgtagcttcctgtcttctggtttgacgctgctttagttatatgcagatggaccttatttcgattccgatggaaatttgttctaaa--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207773634|gb|GD746158.1|GD746158
EST:     TTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAG                         GTTATTGCAAACCGAGCAGCAGAGATTCTTGGCCATAAGCGCGGTGGGAAG
genomic: TTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttagttact ... agcttttcagGTTATTGCAAACCGAGCAGCAGAGATTCTTGGCCATAAGCGCGGTGGGAAG