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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGATTTAACTACCTGTACAGTTTGGTACAGGTAGAGGTTGAAACTAAAACAGCTAAATCATCATCCAGTTGTACCAATGGACTTCTTTGGCTGACAAGgtaatgaacatcatacatttgcatttaacttgtgtttcatattggtatgatattaccaaatctgttatttgagaacattttctaaaatttgtaataggtt...

Basic information

species Glycine max
transcript GLYMA10G00690.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G00690.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0049g01330.t01 (Vitis vinifera), 5'ss of exon 4
CCAGATTTAACTACCTGTACAGTTTGGTACAGGTAGAGGTTGAAACTAAAACAGCTAAATCATCATCCAGTTGTACCAATGGACTTCTTTGGCTGACAAGgtaatgaacatcatacatttgcatttaacttgtgtttcatattggtatgatattaccaaatctgt---tatttgagaacattttctaaaatttgtaataggtt
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CCGAATTCAACCTCTTGTACAGTATGGTAGAAGTCGAGGTTGCAGCTAAGACTGCAAAAGGATCATCCAGTTGTACCAATGGCCTTCTGTGGTTGACAAGgtatccactatcattgctatgtgcttgccctttcttt---gtgaaccttgcattttagaaattggaaatgtttttctttactgtttcgtttgtttagaaaatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6666708|gb|AW278167.1|AW278167
EST:     TGGCTGACAAG                         AGCAATGGATTTCTTGGTGGCTTTGTTCCGAAACTTAATCGAGCATGAAGA
genomic: TGGCTGACAAGgtaatgaaca ... aaatcttcagAGCAATGGATTTCTTGGTGGCTTTGTTCCGAAACTTAATCGAGCATGAAGA
EST: gi|22930207|gb|BU547346.1|BU547346
EST:     ACAGCTAAATCATCATCCAGTTGTACCAATGGACTTCTTTGGCTGACAAG                         AGCAATGGATTTCTTGGTGGCTTTGTTCCGAAACTTAATCGAGCATGAAGA
genomic: ACAGCTAAATCATCATCCAGTTGTACCAATGGACTTCTTTGGCTGACAAGgtaatgaaca ... aaatcttcagAGCAATGGATTTCTTGGTGGCTTTGTTCCGAAACTTAATCGAGCATGAAGA