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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCCTGTAATGAAGGGTCCGAAAAAGTTGAGAGGGCATTTATTCTACAGCTACTAGGTCTTGATAGCTCCAACAGTGGGAAAGAGgttatattctgtttcattgtctaattctattcatacacgttatctttttatttcttctacataatgatgtttttttttagttcaacatcctatcttataa...

Basic information

species Glycine max
transcript GLYMA10G00610.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14125750|gb|BG790188.1|BG790188
EST:     CATTTATTCTACAGCTACTAGGTCTTGATAGCTCCAACAGTGGGAAAGAG                         TTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTA
genomic: CATTTATTCTACAGCTACTAGGTCTTGATAGCTCCAACAGTGGGAAAGAGgttatattct ... agaattgcagTTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTA
EST: gi|213594465|gb|DB970031.1|DB970031
EST:     CATTTATTCTACAGCTACTAGGTCTTGATAGCTCCAACAGTGGGAAAGAG                         TTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTA
genomic: CATTTATTCTACAGCTACTAGGTCTTGATAGCTCCAACAGTGGGAAAGAGgttatattct ... agaattgcagTTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTA
EST: gi|9987546|gb|BE661654.1|BE661654
EST:     CATTTATTCTACAGCTACTAGGTCTTGATAGCTCCAACAGTGGGAAAGAG                         TTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAAGTCATT
genomic: CATTTATTCTACAGCTACTAGGTCTTGATAGCTCCAACAGTGGGAAAGAGgttatattct ... agaattgcagTTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCA-GTCATT
EST: gi|11274935|gb|BF325260.1|BF325260
EST:     CATTTATTCTACAGCTACTAGGTCTTGATAGCTCCAACAGTGGGAAAGAG                         TTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATNTGATCAGTCATTA
genomic: CATTTATTCTACAGCTACTAGGTCTTGATAGCTCCAACAGTGGGAAAGAGgttatattct ... agaattgcagTTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTA
EST: gi|192294686|gb|FG986535.1|FG986535
EST:     CATTTATTCTACAGCTACTAGGTCTTGATAGCTCCAACAGTGGGAAAGAG                         TTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTA
genomic: CATTTATTCTACAGCTACTAGGTCTTGATAGCTCCAACAGTGGGAAAGAGgttatattct ... agaattgcagTTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTA