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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAACTCAGACTTGCCCCGTTTTGATTTAAGTCTGCAACAACTCAGCGATAATTTCCAAAACAAAGGTCTCACCACCGCAGAAATGGTTGCTCTCTCAGgtaattaataattgactacccgctaaatgcatgttgaattattaaggatttactaccctctggacctaaatataaacaacaactgaatatattttttaaa...

Basic information

species Glycine max
transcript GLYMA09G41440.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295821|gb|FG990873.1|FG990873
EST:     TAATTTCCAAAACAAAGGTCTCACCACCGCAGAAATGGTTGCTCTCTCAG                         GAGGGCACACAATTGGGCACGCTAAATGTTCAACTTTCAGAACAAGGATTT
genomic: TAATTTCCAAAACAAAGGTCTCACCACCGCAGAAATGGTTGCTCTCTCAGgtaattaata ... tatatttcagGAGGGCACACAATTGGGCAAGCTAAATGTTCAACTTTCAGAACAAGGATTT
EST: gi|151411350|gb|EV281161.1|EV281161
EST:     TAATTTCCAAAACAAAGGTCTCACCACCGCAGAAATGGTTACTCTCTCAG                         GAGGGCACACAATTGGGCAAGCTAAATGTTCAACTTTCAGAACAAGGATTT
genomic: TAATTTCCAAAACAAAGGTCTCACCACCGCAGAAATGGTTGCTCTCTCAGgtaattaata ... tatatttcagGAGGGCACACAATTGGGCAAGCTAAATGTTCAACTTTCAGAACAAGGATTT
EST: gi|192311048|gb|FK004737.1|FK004737
EST:     TAATTTCCAAAACAAAGGTCTCACCACCGCAGAAATGGTTGCTCTCTCAG                         -AGGGCACACAATTGGGCAAGCTAAATGTTCAACTTTCAG
genomic: TAATTTCCAAAACAAAGGTCTCACCACCGCAGAAATGGTTGCTCTCTCAGgtaattaata ... tatatttcagGAGGGCACACAATTGGGCAAGCTAAATGTTCAACTTTCAG