1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTGCTGATCTGAAGAAGATTAAAGACTGCGTTGGAGATCCCCATGCAGATGTAGAAAATCCTGTTCTTAAGGCTGAACAGGATGCACAGgttggctttctaaaatgcaaacatttttttatgctatccttgtttttttttttttcatttaggcaattctgttgttttatgagtgtattgtaattttttctaacttcggtttcag
species | Glycine max |
transcript | GLYMA09G41070.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCTTAAGGCTGAACAGGATGCACAG ATTGGTCAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATAEST: gi|10709069|gb|BF008793.1|BF008793
genomic: TTCTTAAGGCTGAACAGGATGCACAGgttggctttc ... tcggtttcagATTGGTCAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATA
EST: CCATGCAGATGTAGAAAATCCTGTTCTTTAGGCTTGAACAGGATGCACAG ATTGGTCAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATAEST: gi|27423591|gb|CA935111.1|CA935111
genomic: CCATGCAGATGTAGAAAATCCTGTTCTTAAGGC-TGAACAGGATGCACAGgttggctttc ... tcggtttcagATTGGTCAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATA
EST: CCCATGCAGATGTAGAAAATCCTGTTCTTAAGGCTGAACAGGATGCACAG ATTGGTCAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATAEST: gi|20811827|gb|BQ296305.1|BQ296305
genomic: CCCATGCAGATGTAGAAAATCCTGTTCTTAAGGCTGAACAGGATGCACAGgttggctttc ... tcggtttcagATTGGTCAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATA
EST: CCCATGCAGATGTAGAAAATCCTGTTCTTAAGGCTGAACAGGATGCACAG ATTGGTCAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATAEST: gi|151407222|gb|EV277037.1|EV277037
genomic: CCCATGCAGATGTAGAAAATCCTGTTCTTAAGGCTGAACAGGATGCACAGgttggctttc ... tcggtttcagATTGGTCAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATA
EST: AGGCTGAACAGGATGCACAG ATTGGTCAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATA
genomic: AGGCTGAACAGGATGCACAGgttggctttc ... tcggtttcagATTGGTCAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTGATCTGAAGAAGATTAAAGACTGCGTTGGAGATCCCCATGCAGATGTAGAAAATCCTGTTCTTAAGGCTGAACAGGATGCACAGgttggctttctaaaatgcaaacatttttttatgctatccttgtttttttttttttcatttaggcaattctgttgttttatgagtgtattgtaattttttctaacttcggtttcag
- - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG