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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATCATGATGTGGATTTTGCTGCTGGGAATGTGAAACTTATTACCACCAAAGAAGCGTGGGACCAATCTTTGGAAGAAGCAAGGAGGGGTGGCAAAATTgttagttttccctcttttttattctgtaggacagtaaaactaaagacctatttccatttttgttgtgttgtttggatgaaccagtaataccttaccatga...

Basic information

species Glycine max
transcript GLYMA09G40970.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15201232|gb|BI424764.1|BI424764
EST:     AAGAAGCGTGGGACCAATCTTTGGAAGAAGCAAGGAGGGGTGGCAAAATT                         GTGATTGCAAATTTCAGTGCAACATGGTGTGGTCCTTGTAAGATGATTGCG
genomic: AAGAAGCGTGGGACCAATCTTTGGAAGAAGCAAGGAGGGGTGGCAAAATTgttagttttc ... gttcaaacagGTGATTGCAAATTTCAGTGCAACATGGTGTGGTCCTTGTAAGATGATTGCG
EST: gi|15203337|gb|BI426105.1|BI426105
EST:     AAGAAGCGTGGGACCAATCTTTGGAAGAAGCAAGGAGGGGTGGCAAAATT                         GTGATTGCAAATTTCAGTGCAACATGGTGTGGTCCTTGTAAGATGATTGCG
genomic: AAGAAGCGTGGGACCAATCTTTGGAAGAAGCAAGGAGGGGTGGCAAAATTgttagttttc ... gttcaaacagGTGATTGCAAATTTCAGTGCAACATGGTGTGGTCCTTGTAAGATGATTGCG
EST: gi|13479405|gb|BG508748.1|BG508748
EST:     AAGAAGCGTGGGACCAATCTTTGGAAGAAGCAAGGAGGGGTGGCAAAATT                         GTGATTGCAAATTTCAGTGCAACATGGTGTGGTCCTTGTAAGATGATTGCG
genomic: AAGAAGCGTGGGACCAATCTTTGGAAGAAGCAAGGAGGGGTGGCAAAATTgttagttttc ... gttcaaacagGTGATTGCAAATTTCAGTGCAACATGGTGTGGTCCTTGTAAGATGATTGCG
EST: gi|7478449|gb|AW666269.1|AW666269
EST:     AAGAAGCGTGGGACCAATCTTTGGAAGAAGCAAGGAGGGGTGGCAAAATT                         GTGATTGCAAATTTCAGTGCAACATGGTGTGGTCCTTGTAAGATGATTGCG
genomic: AAGAAGCGTGGGACCAATCTTTGGAAGAAGCAAGGAGGGGTGGCAAAATTgttagttttc ... gttcaaacagGTGATTGCAAATTTCAGTGCAACATGGTGTGGTCCTTGTAAGATGATTGCG
EST: gi|21257008|gb|BQ453896.1|BQ453896
EST:     AAGAAGCGTGGGACCAATCTTTGGAAGAAGCAAGGAGGGGTGGCAAAATT                         GTGATTGCAAATTTCAGTGCAACATGGTGTGGTCCTTGTAAGATGATTGCG
genomic: AAGAAGCGTGGGACCAATCTTTGGAAGAAGCAAGGAGGGGTGGCAAAATTgttagttttc ... gttcaaacagGTGATTGCAAATTTCAGTGCAACATGGTGTGGTCCTTGTAAGATGATTGCG
EST: gi|13790090|gb|BG652681.1|BG652681
EST:     AAGAAGCGTGGGACCAATCTTTGGAAGAAGCAAGGAGGGGTGGCAAAATT                         GTGATTGCAAATTTCAGTGCAACATGGTGTGGTCCTTGTAAGATGATTGCG
genomic: AAGAAGCGTGGGACCAATCTTTGGAAGAAGCAAGGAGGGGTGGCAAAATTgttagttttc ... gttcaaacagGTGATTGCAAATTTCAGTGCAACATGGTGTGGTCCTTGTAAGATGATTGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATCATGATGTGGATTTTGCTGCTGGGAATGTGAAACTTATTACCACCAAAGAAGCGTGGGACCAATCTTTGGAAGAAGCAAGGAGGGGTGGCAAAATTgttagttttccctcttttttattctgtaggacagtaaaactaaagacctatttccatttttgttgtgttgtttggatgaaccagtaataccttaccatga

- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccctc