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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCCAGTTGAAGGATCAGACACTCATTCTGGAATCTCCAATGAGGTATCTGATGTTTCAACTATTGAACAACGCCGGGCTTATAAACTGAAACTTCAGgtaaccaagtgcagaaattttggaattgcaagtagatctctgttatttctgcaactgtttgacatctaggaagctaatgctaagtttatggcag

Basic information

species Glycine max
transcript GLYMA09G40480.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G40480.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv15s0048g00800.t01 (Vitis vinifera), 5'ss of exon 3
AGAGCCAGTTGAAGGATCAGACACTCATTCTGGAATCTCCAATGAGGTATCTGATGTTTCAACTATTGAACAACGCCGGGCTTATAAACTGAAACTTCAGgtaaccaagtgcagaaattttggaattgcaagtagatct--ctgttatttctgcaactgtttgacatcta-ggaagctaatgctaagtttatggcag
 ||||| |  |||||||| ||  ||||||||| |   ||   ||| || |||||||||||||| ||||| ||||| |||||||| || ||  ||||||||||||  | |    | ||  ||     |||||| ||  ||  ||  | ||  | ||| |           | |||| ||||||  || ||  ||||||
TGAGCCTGCCGAAGGATCTGATTCTCATTCTGAAGCTTCAGGTGAAGTTTCTGATGTTTCAACAATTGAGCAACGACGGGCTTACAAGCTCGAACTTCAGgtaa--atgcaaggcaaccttttgggtgcaagcagtactatcttctgttctttcaattacccagttctcatggaatctaatgtaaaattcctggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208242213|gb|GE037823.1|GE037823
EST:     CGCCGGGCTTATAAACTGAAACTTCAG                         GAAGGTATATCACTTTTTAACAGGAAG
genomic: CGCCGGGCTTATAAACTGAAACTTCAGgtaaccaagt ... tttatggcagGAAGGTATATCACTTTTTAACAGGAAG
EST: gi|193581971|gb|FK536896.1|FK536896
EST:     CGCCGGGCTTATAAACTGAAACTTCAG                         GAAGGTATATCACTTTTTAACAGGAAGCCG
genomic: CGCCGGGCTTATAAACTGAAACTTCAGgtaaccaagt ... tttatggcagGAAGGTATATCACTTTTTAACAGGAAGCCG