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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTTGTTGCTATGCTTGGCACCCGCAGACAACCTTTTCCTGCGTTTGGATTTGACTTGGTTCATTGCTCTAGGTGTTTGATCCCGTTTACAGCCTACAgtaagttcttcattgcagctcacttgtgcatatattccaatcttctgcatgcttgtcctttccctaatgcagcaaatgtgccttgcag

Basic information

species Glycine max
transcript GLYMA09G40110.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G40110.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv15s0048g01990.t01 (Vitis vinifera), 5'ss of exon 3
GCTTTTGTTGCTATGCTTGGCACCCGCAGACAACCTTTTCCTGCGTTTGGATTTGACTTGGTTCATTGCTCTAGGTGTTTGATCCCGTTTACAGCCTACAgtaagttcttcattgcagctcacttgtgcatatattccaatcttctgcatgcttgtcctttccct--aatgcagcaaatgtgccttgcag
||  |||| || ||||||||||| || ||||  || |||||||| ||   |||||||||||| || |||||| | ||||||||||| ||||| || || ||| ||||||  || |||       | |  | || | |   ||||     | ||  | ||| | ||  |||  |        |  ||||||
GCACTTGTGGCAATGCTTGGCACTCGTAGACTGCCATTTCCTGCATTCTCATTTGACTTGGTGCACTGCTCTCGATGTTTGATCCCTTTTACCGCTTATAgtgagttctatat-gcaatgtggctattgaaatttacacttcttacttgtcctcctacttgctctgtaataaaatgttctggatttgcag