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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTCAATGACCTACATGCTTTGATAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaactctaagaacatttctcctttttttcatctttgttttattttcctaatatcttgttgaatttttttcag

Basic information

species Glycine max
transcript GLYMA09G40060.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254336246|gb|GR842425.1|GR842425
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|298179034|gb|HO024769.1|HO024769
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|58015330|gb|CX702072.1|CX702072
EST:     AAGTCCAACACCACAGGGGACACCCCTCCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: AAGTCCAACACCACAGGGGACACCCCT-CCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|254343225|gb|GR856929.1|GR856929
EST:     TAAGTCCAACACCACAGGGGACA-CCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|254324273|gb|GR840590.1|GR840590
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|192323627|gb|FK019038.1|FK019038
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|213589574|gb|DB973217.1|DB973217
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|254343224|gb|GR856928.1|GR856928
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|151394416|gb|EV264287.1|EV264287
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|8403460|gb|BE059094.1|BE059094
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|213617944|gb|DB967306.1|DB967306
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTT
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTT
EST: gi|120492016|gb|EH220183.1|EH220183
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|254324274|gb|GR840591.1|GR840591
EST:     AGTCCAACACCCACAGGGGACACCCCTCCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: AGTCCAACA-CCACAGGGGACACCCCT-CCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|7686223|gb|AW756934.1|AW756934
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|19348498|gb|BM893030.1|BM893030
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|7639927|gb|AW734239.1|AW734239
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|21888536|gb|BQ741749.1|BQ741749
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|19269910|gb|BM886166.1|BM886166
EST:     CCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: CCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|254336245|gb|GR842424.1|GR842424
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|12773457|gb|BG238384.1|BG238384
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTAC
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTAC
EST: gi|27425936|gb|CA937456.1|CA937456
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|23729522|gb|BU762853.1|BU762853
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|48575471|gb|CO036420.1|CO036420
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|19348375|gb|BM892907.1|BM892907
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|14259242|gb|BG882150.1|BG882150
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|254335608|gb|GR847136.1|GR847136
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|23057464|gb|BU578138.1|BU578138
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|7691181|gb|AW759313.1|AW759313
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|213607370|gb|DB967079.1|DB967079
EST:     TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGGACACCCCTCCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|22932789|gb|BU549928.1|BU549928
EST:     CCCCCTAGCTCTGTTGGGAAAG                         TCCAAGAATGCTCTACTCTCCACTTTCTTGNNNNNTGATCAATTTGTGTGG
genomic: CCCCCTAGCTCTGTTGGGAAAGgtatgcgaac ... tttttttcagTCCAAGAATGCTCTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG