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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTAGATGGTGGTATATTGTTCGGCTTTTGCAATGGCATCATGCTGAAGGGCTTCTTCTTCCTTCTCTTATCATTGACTGGGTTTTGCGTCAATTACAGgtgattgcatataagaagtattgtgtgttcatagaaaataaactgagtattttatattttttgctgatttcaatcctttagacttaaggttttgatttttcccacttctgctcctttcag

Basic information

species Glycine max
transcript GLYMA09G39550.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39550.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G00450.1 (Arabidopsis thaliana), 5'ss of exon 8
TTTTAGATGGTGGTATATTGTTCGGCTTTTGCAATGGCATCATGCTGAAGGGCTTCTTCTTCCTTCTCTTATCATTGACTGGGTTTTGCGTCAATTACAGgtgattgcatataagaagtattgtgtgttcatagaaaataaactgagtattttatattttttgctgatttcaatcctttagacttaaggttttgatttttcccacttctgctcctttcag
||||| |||||||||||| || || ||| | || ||||| |||||||||||||||||| |||||  ||| ||  |||| |||||| |    |  ||||||||   ||| | | |||   ||||     | ||  || || || |      || || | ||  |                                                         
TTTTAAATGGTGGTATATGGTGCGTCTTCTACAGTGGCACCATGCTGAAGGGCTTCTTTTTCCTAATCTCATTGTTGATTGGGTTCTCAAGCTCTTACAGgta--tgc-tgttagattaattg---acttattcaagatgaatt------ttcatttcttcag---------------------------------------------------------

upper sequence: GLYMA09G39550.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv15s0046g02510.t01 (Vitis vinifera), 5'ss of exon 8
TTTTAGATGGTGGTATATTGTTCGGCTTTTGCAATGGCATCATGCTGAAGGGCTTCTTCTTCCTTCTCTTATCATTGACTGGGTTTTGCGTCAATTACAGgtgattgcatataagaagtattgtgtgt---tcatagaaaataaactgagtattttatatttt---------------------ttgctgatttcaatccttt-agacttaaggttttgattt--ttcccacttctgctc-ctttcag
|||||  ||||||||| | || ||| | ||||||||||| ||||||||||| ||  |||||||||| || |||||||| |||| | | |||||| ||||||| ||||  ||    | ||  ||| | |    ||     | |||  ||  |||| | |  |                       ||| | |||| |   | || |||    ||   ||| | |   |   |  |||   | |||||||
TTTTAAGTGGTGGTATGTGGTGCGGATCTTGCAATGGCACCATGCTGAAGGCCTGATTCTTCCTTCGCTCATCATTGATTGGGCTCTTCGTCAACTACAGgt-attgattacttcatgtcatgtttatgacccacgttgagtaagatgtatattatgtgctccaagtaggaacaacaatgaatattgattattttatcacgttgagatagcagaccttgttctaactttaatatctatgctctttcag