Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGTGGAAAGTAAGAGTTGAGTTGCCGGATGCTTATCCTTACAAATCTCCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacatagtagtaatgctctgaaaattgtctgtattgagtagttgcgtgtctattagctgatagaatatatgataagatatatttagataatatat...

Basic information

species Glycine max
transcript GLYMA09G39370.4
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39370.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os10g31000.1 (Oryza sativa), 5'ss of exon 3
GTGTGTGGAAAGTAAGAGTTGAGTTGCCGGATGCTTATCCTTACAAATCTCCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacatagtagtaatgctctgaaaattgtctgtattgagtagttgcgtgtctattagctgatagaatatatgataagatatatttagataatatat
|||| ||||| || ||||| || ||||| ||||| ||||||||||||||||| || ||||| ||  | |||||||| ||||| || ||||| ||||| |||| || |  |  |    || | ||      | |||| | ||| |    || ||| || |   |  | |   |  || |    |     | || ||| || 
GTGTCTGGAAGGTTAGAGTAGAATTGCCTGATGCATATCCTTACAAATCTCCGTCGATTGGTTTCGTTAACAAGATTTATCATCCTAATGTGGATGAAATgtgaggatttgatgtccataccct------tttctggaatgattgaa-gcttgtgtaatcaattgttgctgacctgcttttgttggacttgaaaatgtag

upper sequence: GLYMA09G39370.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G053764_T03 (Zea mays), 5'ss of exon 3
GTGTGTGGAAAGTAAGAGTTGAGTTGCCGGATGCTTATCCTTACAAATCTCCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcac-atagtagtaatgctctgaaaattgtctgtattgagtagttgcgtgtctattagctgatagaatatatgataagatatatttagataatatat
|||| ||||| || || || ||  |||| ||||| |||||||||||||| || ||||| || || ||||||||||| |||||||| ||||| |||||||||| ||||  || ||  |||  || |     || | | ||||||    |   |  |  | |      |    ||  || |   || |   |  | |||  | 
GTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATATCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCCAAATGTCGATGAGATgtgagcattatggtcttaa-actatttttcttattt-tattgaa-gttcatgcatggagttaacatttccttacctgttcttatttgactgcaaaatgcag

upper sequence: GLYMA09G39370.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G053764_T06 (Zea mays), 5'ss of exon 2
GTGTGTGGAAAGTAAGAGTTGAGTTGCCGGATGCTTATCCTTACAAATCTCCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcac-atagtagtaatgctctgaaaattgtctgtattgagtagttgcgtgtctattagctgatagaatatatgataagatatatttagataatatat
|||| ||||| || || || ||  |||| ||||| |||||||||||||| || ||||| || || ||||||||||| |||||||| ||||| |||||||||| ||||  || ||  |||     |     || | | ||||||    |   || |  | |      |    ||  || |   || |   |  | |||  | 
GTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATATCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCCTAATGTCGATGAGATgtgagcattatggtcttaaactattttttcttattt-tattgaa-gttcatgtatggagttaacatttccttacctgttcttatttggctgcaaaatgcag

upper sequence: GLYMA09G39370.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G150867_T02 (Zea mays), 5'ss of exon 3
GTGTGTGGAAAGTAAGAGTTGAGTTGCCGGATGCTTATCCTTACAAATCTCCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacatagtagt--aatgctctgaaaa-ttgtctgtattgagta-gttgcgtgtctattagctgatagaatatatgataagatatatttagataatatat
|| | ||||  || ||||| ||  |||| ||||| |||||||||||||| || || ||||| || ||||| ||||| |||||||| ||||| ||||| |||| || || |   |    ||||  |||  |  |||||  | |  |  |  ||     ||||    || |       |  ||| |     |  |  |        
GTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTATCCTTACAAATCCCCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtacttttgaactcaatgacctgttaccttgtcaatttcaaccacattaaaaatctagctcctaaccactcctg-gatgaatgcaacctgcag-------

upper sequence: GLYMA09G39370.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S161_122V6.1 (Physcomitrella patens), 5'ss of exon 3
GTGTGTGGAAAGTAAGAGTTGAGTTGCCGGATGCTTATCCTTACAAATCTCCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacatagtagtaatgctctgaaaattgtctgtattgagtagttgcgtgtctattagctgatagaatatatgataagatatatttagataatatat-----
|    |||||| |  ||||||| ||||| ||||||||||| |||||||||||||||||||| ||| | |||| |||||  || || || || ||||||||||||| |  |    ||   | ||      |||| |   ||  || ||    |  ||  ||| |  | |  | |||  |   |  |  |    |  |         
GGACCTGGAAAATCCGAGTTGAATTGCCCGATGCTTATCCCTACAAATCTCCTTCCATTGGGTTTGTGAACAGGATCTTCCATCCAAACGTGGATGAGATgtaag-atgtccatgtctagttcgatctgttgttt---ttcggtcgtaatttacctcatagttc-tggtgtgtattctgtaacgttctaccctttttcgcacttc

upper sequence: GLYMA09G39370.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S37_166V6.1 (Physcomitrella patens), 5'ss of exon 3
GTGTGTGGAAAGTAAGAGTTGAGTTGCCGGATGCTTATCCTTACAAATCTCCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacatagtagtaatgctctgaaaattgtc-tgta-ttgagtagttgcgtgtctattagctgatagaatatatgataagatatatttagataatatat
|    |||||  |  |||| || ||||| ||||||||||| ||||| |||||||||||||| ||| | || | |||||  || || || || ||||||||||||| | ||     |   | |   |  |  ||| | || || || | || ||  |  ||    || |    | |         | ||  ||| |  ||| |
GAACCTGGAAGATCCGAGTCGAATTGCCTGATGCTTATCCCTACAAGTCTCCTTCCATTGGGTTTGTGAATAGGATCTTCCATCCCAACGTAGATGAGATgtaag-atattcatttccagtttgaactacagtcctatagttcagcaatt-cgaatgcatagtttgttcttttcttcttcttcttttaaatagtttgtattt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298176485|gb|HO026720.1|HO026720
EST:     CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
genomic: CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacat ... ttaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
EST: gi|151393517|gb|EV263392.1|EV263392
EST:     CCTTCCATTGGATTTATCAACAAGTTCTATCACCCGAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
genomic: CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacat ... ttaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
EST: gi|254327210|gb|GR836819.1|GR836819
EST:     CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
genomic: CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacat ... ttaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
EST: gi|192294831|gb|FG987520.1|FG987520
EST:     CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
genomic: CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacat ... ttaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
EST: gi|151395834|gb|EV265711.1|EV265711
EST:     CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGACGAGAT                         GTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
genomic: CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacat ... ttaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
EST: gi|298193444|gb|HO033878.1|HO033878
EST:     CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
genomic: CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacat ... ttaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
EST: gi|298195504|gb|HO043895.1|HO043895
EST:     CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
genomic: CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacat ... ttaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
EST: gi|254327211|gb|GR836820.1|GR836820
EST:     CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
genomic: CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacat ... ttaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
EST: gi|7924716|gb|AW830742.1|AW830742
EST:     CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
genomic: CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacat ... ttaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
EST: gi|17020964|gb|BM091998.1|BM091998
EST:     CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
genomic: CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacat ... ttaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
EST: gi|298191356|gb|HO038835.1|HO038835
EST:     CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
genomic: CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacat ... ttaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
EST: gi|21285429|gb|BQ473300.1|BQ473300
EST:     CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT
genomic: CCTTCCATTGGATTTATCAACAAGATCTATCACCCGAATGTTGATGAGATgtaagcacat ... ttaatttcagGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTT