1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTTCTTAAAATATTTCCGAGCGGATAATATAGTAAACGATGCAGAGTTTATTCGAGTACGCCTTGTTCCAGATGCTGGTCCTTGGACAATATTGGGACAGgtatttgagttattgttttttataggtattcatttgagttgctgattttgatgcctaaccagtctggctttgcaatctgtaacttcttcctttcctttct...
species | Glycine max |
transcript | GLYMA09G39020.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GATGCTGGTCCTTGGACAATATTGGGACAG AGCTATGGTGGATTTTGTGCAGTCACATATTTGAGTTTTGCACCACAAGGAEST: gi|151394459|gb|EV264330.1|EV264330
genomic: GATGCTGGTCCTTGGACAATATTGGGACAGgtatttgagt ... attgtgatagAGCTATGGTGGATTTTGTGCAGTCACATATTTGAGTTTTGCACCACAAGGA
EST: TTCGAGTACGCCTTGTTCCAGATGCTGGTCCTTGGACAATATTGGGACAG AGCTATGGTGGATTTTGTGCAGTCACATATTTGAGTTTTGCACCACAAGGAEST: gi|192301724|gb|FG997638.1|FG997638
genomic: TTCGAGTACGCCTTGTTCCAGATGCTGGTCCTTGGACAATATTGGGACAGgtatttgagt ... attgtgatagAGCTATGGTGGATTTTGTGCAGTCACATATTTGAGTTTTGCACCACAAGGA
EST: TTCGAGTACGCCTTGTTCCAGATGCTGGTCCTTGGACAATATTGGGACAG AGCTATGGTGGATTTTGTGCAGTCACATATTTGAGTTTTGCACCACAAG-A
genomic: TTCGAGTACGCCTTGTTCCAGATGCTGGTCCTTGGACAATATTGGGACAGgtatttgagt ... attgtgatagAGCTATGGTGGATTTTGTGCAGTCACATATTTGAGTTTTGCACCACAAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCTTAAAATATTTCCGAGCGGATAATATAGTAAACGATGCAGAGTTTATTCGAGTACGCCTTGTTCCAGATGCTGGTCCTTGGACAATATTGGGACAGgtatttgagttattgttttttataggtattcatttgagttgctgattttgatgcctaaccagtctggctttgcaatctgtaacttcttcctttcctttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctttcc