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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACCTGATAGTTTTTTCTTTGAAAACTATCAGGCTATTGCCGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGgcatgtacttgtttatcaatgaatgcataaggtgcacattgcttgtttatgtgcatgctctgtgaattttctttttgttaaggtggaattttataatttt...

Basic information

species Glycine max
transcript GLYMA09G38650.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38650.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0023g00370.t01 (Vitis vinifera), 5'ss of exon 3
TTACCTGATAGTTTTTTCTTTGAAAACTATCAGGCTATTGCCGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGgcatgta-cttgtttatcaatgaatgc-----ataaggtgca-cattgcttgtttatgtgcatgctctgtgaattttctttttgttaaggtggaattttataatttt
                                 ||||||||| ||||| |||||||||| || ||||| || || || |||||||||||||| |||||||||  | | ||  | | |   |       ||||   |||  ||| ||| || ||||   |||| | |||| ||     ||    |  ||      || |||   
---------------------------------GCTATTGCCACTGCAAGGATGAAAGGAGAGTTCCCGGAGAGAATGGGACAGCCAGAATGTCAGgcatgtgtcctattctttattttctttcccttataaatggcagtatttcttcttcatgtatgtgctttttgaagttgtaaatttactatttg----cctaaaat---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814048|gb|BI786323.1|BI786323
EST:     CACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAG                         TACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCAT
genomic: CACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGgcatgtactt ... tgctttccagTACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCAT
EST: gi|26057548|gb|CA800462.1|CA800462
EST:     CACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAG                         TACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCAT
genomic: CACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGgcatgtactt ... tgctttccagTACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCAT
EST: gi|207770523|gb|GD742879.1|GD742879
EST:     CACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAG                         TACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCAT
genomic: CACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGgcatgtactt ... tgctttccagTACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCAT