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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATTGCCGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGgcatgtacttgtttatcaatgaatgcataaggtgcacattgcttgtttatgtgcatgctctgtgaattttctttttgttaaggtggaattttataatttt...

Basic information

species Glycine max
transcript GLYMA09G38650.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38650.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0023g00370.t01 (Vitis vinifera), 5'ss of exon 3
GCTATTGCCGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGgcatgta-cttgtttatcaatgaatgc-----ataaggtgca-cattgcttgtttatgtgcatgctctgtgaattttctttttgttaaggtggaattttataatttt
||||||||| ||||| |||||||||| || ||||| || || || |||||||||||||| |||||||||  | | ||  | | |   |       ||||   |||  ||| ||| || ||||   |||| | |||| ||     ||    |  ||      || |||   
GCTATTGCCACTGCAAGGATGAAAGGAGAGTTCCCGGAGAGAATGGGACAGCCAGAATGTCAGgcatgtgtcctattctttattttctttcccttataaatggcagtatttcttcttcatgtatgtgctttttgaagttgtaaatttactatttg----cctaaaat---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23052731|gb|BU577222.1|BU577222
EST:     CACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAG                         TACTATTTGAAGACAGGAACTTGCAAATTTGTATCCTCATGCAGGTTTCAT
genomic: CACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGgcatgtactt ... tgctttccagTACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCAT
EST: gi|9819702|gb|BE555215.1|BE555215
EST:     CACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAG                         TACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCAT
genomic: CACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGgcatgtactt ... tgctttccagTACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCAT
EST: gi|254331899|gb|GR846209.1|GR846209
EST:     CACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAG                         TACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCAT
genomic: CACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGgcatgtactt ... tgctttccagTACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCAT
EST: gi|26057548|gb|CA800462.1|CA800462
EST:     CACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAG                         TACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCAT
genomic: CACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGgcatgtactt ... tgctttccagTACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCAT
EST: gi|207770523|gb|GD742879.1|GD742879
EST:     CACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAG                         TACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCAT
genomic: CACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGgcatgtactt ... tgctttccagTACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCAT
EST: gi|7591429|gb|AW707162.1|AW707162
EST:     CACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAG                         TACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCAT
genomic: CACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGgcatgtactt ... tgctttccagTACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCAT