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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCACAGAAAGAGTGTCTTCTTGTCAATGCACCTTTGATTTGTAGAGCTTCTTTGCGTGTTCCCTTTTCTGTTCTTAAGTATGCCATGACCCTTGATGgtgagacgagaattctattcattttccctttcttgaatgaattatagtaaaaaattgcattgcgttggtgttggtgtttgtatttgtcttttttaccttccttttgctgctgcag

Basic information

species Glycine max
transcript GLYMA09G38520.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38520.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G47390.2 (Arabidopsis thaliana), 5'ss of exon 6
GATGCACAGAAAGAGTGTCTTCTTGTCAATGCACCTTTGATTTGTAGAGCTTCTTTGCGTGTTCCCTTTTCTGTTCTTAAGTATGCCATGACCCTTGATGgtgagacgagaattctattcattttccctttcttgaatgaattatagtaaaaaattgcattgcgttggtgttggtgtttgtatttgtcttttttaccttccttttgctgctgcag
||||| | ||||  |||||||||||| ||||| |||||||||  |||||||| ||  || ||||| || ||||||||||||||||||||||| ||||||||| |      | ||| |      || | | | ||    | ||    ||   |  |  | ||   || || ||  || | |                                   
GATGCTCGGAAATCGTGTCTTCTTGTGAATGCTCCTTTGATTCATAGAGCTTGTTCTCGAGTTCCGTTCTCTGTTCTTAAGTATGCCATGACTCTTGATGgtaact----atttcaacctccatttcatatgtttgtaggatagctgttttagctaacgttttttttgt-ttattgatag-----------------------------------

upper sequence: GLYMA09G38520.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0023g00680.t01 (Vitis vinifera), 5'ss of exon 3
GATGCACAGAAAGAGTGTCTTCTTGTCAATGCACCTTTGATTTGTAGAGCTTCTTTGCGTGTTCCCTTTTCTGTTCTTAAGTATGCCATGACCCTTGATGgtgag-------------acgagaattcta-----ttcattttccctttcttgaatgaattatagtaaaaa---attgcattgcgttggtgttggtgtttgtatttgtcttttttaccttccttttgctgctgcag------------------------------------------------------------
|| ||    |||  ||| ||  | |||||||| |||||||| | ||||||| |||  || ||||||||||||||||| |||||||| ||||||||||||||||||             |  | | || ||     |||  | || || |||    | | || || |        ||| | |    ||  | |   | ||| || | ||  | || |||| |  ||   |   |  |                                                            
GAAGCTTTAAAATCGTGCCTCATCGTCAATGCTCCTTTGATATATAGAGCTGCTTCTCGAGTTCCCTTTTCTGTTCTCAAGTATGCTATGACCCTTGATGgtgagggttatgaatttaataaaatttttaccctcttctctctctctctctctcttaatttttaatttttttttatttcttccaatttctttctttttttttaatggtaatcttaacctccaattaattaaagaggacttcaaaatttgaaataaacagtagtttattctctgatggtcttctttggttctaacag