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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAACCACCCGCAAAACCTTTAGCTGAACCATCTTCTTCAGTCTTGGCAACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAAgtaagcagatgcttcagtcttgtttccttctattagtaatagcaaatgtataagcttttggctacatgattggagtggagcaatcagctacggaaaccttcatgtccaattttctcctgcag

Basic information

species Glycine max
transcript GLYMA09G38440.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38440.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0023g00760.t01 (Vitis vinifera), 5'ss of exon 3
AGGAACCACCCGCAAAACCTTTAGCTGAACCATCTTCTTCAGTCTTGGCAACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAAgtaagcagatgcttcagtcttgtttccttctattagtaatagcaaatgtataagcttttggctacatgattggagtggagcaatcagctacggaaaccttcatgtccaattttctcctgcag
| | |      |  ||  | | |    |||| ||  || | |  |||||  || | |||||  ||||| |||| ||||||||||||||||||||||| |||||||||   |||  | |  |   ||||| ||       |  ||  | |         |||  |   ||    |  |      || | |  | |                            
AAGCAAAGGATGTTAAGTCATCAAACAAACCTTCGCCTGCGGCTTTGGCTTCTGAGGAATCAATCTCTGAGTTCATTACTCAAGTTGCAAGTCTTGTGAAgtaagcaa--gctcaatttgttactccttgtagcctatttgacagttattcccaaacatggtca---gagcaaatcgtgtttttctgttttgcag---------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16348210|gb|BI973805.1|BI973805
EST:     ACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAA                         GCTTGTTGATTCGAGAGACATTGTGGAGTTGAAGCTGAAGCAGCATGATGT
genomic: ACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAAgtaagcagat ... tctcctgcagGCTTGTTGATTCGAGAGACATTGTGGAGTTGAAGCTGAAGCAGCATGATGT
EST: gi|213605948|gb|DB956648.1|DB956648
EST:     ACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAA                         GCTTGTTGATTCGAGAGACATTGTGGAGTTGAAGCTGAAGCAGCATGATGT
genomic: ACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAAgtaagcagat ... tctcctgcagGCTTGTTGATTCGAGAGACATTGTGGAGTTGAAGCTGAAGCAGCATGATGT
EST: gi|8670260|gb|BE191367.1|BE191367
EST:     ACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAA                         GCTTGTTGATTCGAGAGACATTGTGGAGTTGAAGCTGAAGCAGCATGATGT
genomic: ACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAAgtaagcagat ... tctcctgcagGCTTGTTGATTCGAGAGACATTGTGGAGTTGAAGCTGAAGCAGCATGATGT
EST: gi|213604876|gb|DB956161.1|DB956161
EST:     ACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAA                         GCTTGTTGATTCGAGAGACATTGTGGAGTCGAAGCTGAAGCAGCATGATGT
genomic: ACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAAgtaagcagat ... tctcctgcagGCTTGTTGATTCGAGAGACATTGTGGAGTTGAAGCTGAAGCAGCATGATGT
EST: gi|209714756|gb|BW654106.1|BW654106
EST:     ACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAA                         GCTTGTTGATTCGAGAGACATTGTGGAGTTGAAGCTGAAGCAGCATGATGT
genomic: ACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAAgtaagcagat ... tctcctgcagGCTTGTTGATTCGAGAGACATTGTGGAGTTGAAGCTGAAGCAGCATGATGT
EST: gi|6134057|gb|AW132386.1|AW132386
EST:     ACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAA                         GCTTGTTGATTCGAGAGACATTGTGGAGTTGAAGCTGAAGCAGCATGATGT
genomic: ACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAAgtaagcagat ... tctcctgcagGCTTGTTGATTCGAGAGACATTGTGGAGTTGAAGCTGAAGCAGCATGATGT
EST: gi|120529588|gb|EH257722.1|EH257722
EST:     ACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAA                         GCTTGTTGATTCGAGAGACATTGTGGAGTTGAAGCTGAAGCAGCATGATGT
genomic: ACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAAgtaagcagat ... tctcctgcagGCTTGTTGATTCGAGAGACATTGTGGAGTTGAAGCTGAAGCAGCATGATGT