Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGgtaatgactgtagtgtgatactcctctgtatgctatgcttattctaaaattttcaacttttctcaatgaagatgaccaactattttttgtgttgtgaccgagttttatgctgatcaactccatcag

Basic information

species Glycine max
transcript GLYMA09G38110.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38110.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 3
AATACAGAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGgtaatgactg-tagtgtgatactcctctgtatgctatgcttattc-taaaattttcaacttttctcaatgaagatgaccaactattttttgtgttgtgac-cgagttttatgctgatcaactccatcag
| ||||||||||| |||||||| |||||||||||||| || ||||| ||||| |||||| |      |  | |  || |  | | ||| |  | || |||| ||  |||| || || |||  |||  |  ||| |||  ||||| | | |  |  | | ||                        
AGTACAGAACTGTCTCTGGAGTCGCTGGGCCATTGGTTATCCTTGAGAAAGTCAAGgtattcctcacttatttagtatttttatttattcctttctgattcatatgatttccatctgttcagaatctat-tgatcaatgattttctttctaattgcaccag------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209723248|gb|BW675195.1|BW675195
EST:     GAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAG                         GGACCTAAGTTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAACTACT
genomic: GAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGgtaatgactg ... actccatcagGGACCTAAGTTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAACTACT
EST: gi|298183011|gb|HO028274.1|HO028274
EST:     GAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAG                         GGACCTAAGTTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAACTACT
genomic: GAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGgtaatgactg ... actccatcagGGACCTAAGTTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAACTACT
EST: gi|213617416|gb|DB965231.1|DB965231
EST:     GAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAG                         GGACCTAAGTTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAACTACT
genomic: GAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGgtaatgactg ... actccatcagGGACCTAAGTTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAACTACT
EST: gi|6567285|gb|AW234896.1|AW234896
EST:     GAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAG                         GGACCTAAGTTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAACTACT
genomic: GAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGgtaatgactg ... actccatcagGGACCTAAGTTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAACTACT
EST: gi|5342420|gb|AI794704.1|AI794704
EST:     GAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAG                         GGACCTAAGTTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAACTACT
genomic: GAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGgtaatgactg ... actccatcagGGACCTAAGTTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAACTACT
EST: gi|213607123|gb|DB967000.1|DB967000
EST:     GAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAG                         GGACCTAAGTTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAACTACT
genomic: GAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGgtaatgactg ... actccatcagGGACCTAAGTTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAACTACT
EST: gi|10709431|gb|BF009155.1|BF009155
EST:     AACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAAGTTAAG                         GGACCTAAGTTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAACTAC
genomic: AACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGAT-AAAGTTAAGgtaatgactg ... actccatcagGGACCTAAGTTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAACTAC
EST: gi|213592755|gb|DB957813.1|DB957813
EST:     GAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAG                         GGACCTAAGTTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAACTACT
genomic: GAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGgtaatgactg ... actccatcagGGACCTAAGTTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAACTACT
EST: gi|213602215|gb|DB958475.1|DB958475
EST:     GAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAG                         GGACCTAAGTTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAACTACT
genomic: GAACTGTGTCTGGAGTTGCTGGGCCATTGGTCATTCTTGATAAAGTTAAGgtaatgactg ... actccatcagGGACCTAAGTTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAACTACT