1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGTGCAGACCCGTTCTTCCTGCTAGCGGGTCCTAATGTGATTGAATCAGAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGACTATTGCATCTGAgtatgtaattatctctatttatgattattttttttattaatgggaaaataaatgtgatttgatggaaatccattagaaaaagctagcaggaagaacgggtgtatatttgatagctaacatgatcttgagtgtatatgtgtcttccag
species | Glycine max |
transcript | GLYMA09G38010.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGACTATTGCATCTGA AGTTGGAATACCGTTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAACEST: gi|298181028|gb|HO022467.1|HO022467
genomic: GAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGACTATTGCATCTGAgtatgtaatt ... tgtcttccagAGTTGGAATACCGTTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAAC
EST: GAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGACTATTGCATCTGA AGTTGGAATACCGTTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAACEST: gi|18040764|gb|BM309058.1|BM309058
genomic: GAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGACTATTGCATCTGAgtatgtaatt ... tgtcttccagAGTTGGAATACCGTTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAAC
EST: GAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGACTATTGCATCTGA AGTTGGAATACCGTTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAACEST: gi|298172130|gb|HO021722.1|HO021722
genomic: GAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGACTATTGCATCTGAgtatgtaatt ... tgtcttccagAGTTGGAATACCGTTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAAC
EST: GAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGACTATTGCATCTGA AGTTGGAATACCGTTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAACEST: gi|151406834|gb|EV276649.1|EV276649
genomic: GAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGACTATTGCATCTGAgtatgtaatt ... tgtcttccagAGTTGGAATACCGTTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAAC
EST: GAGGAGCACGTTCTGCGGATGGCTAAGAACATCAAGACTATTGCATCTGA AGTTGGAATACCGTTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAAC
genomic: GAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGACTATTGCATCTGAgtatgtaatt ... tgtcttccagAGTTGGAATACCGTTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGCAGACCCGTTCTTCCTGCTAGCGGGTCCTAATGTGATTGAATCAGAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGACTATTGCATCTGAgtatgtaattatctctatttatgattattttttttattaatgggaaaataaatgtgatttgatggaaatccattagaaaaagctagcaggaagaacgggtgtatatttgatagctaacatgatcttgagtgtatatgtgtcttccag
- - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC