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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAACAAAGAATTAAAAACGCTGAACTTGGAATTTTAAGCGAAGAGCAAGAGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTGgtaagttctcttggacttagaataagtcacattcatgttgtcattctccttcatttgcatgaagaacttacttttcattgcaaggctttggtaaaatggtaattaatacatatgttatttgcag

Basic information

species Glycine max
transcript GLYMA09G36770.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G36770.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g43500.1 (Oryza sativa), 5'ss of exon 3
ACAACAAAGAATTAAAAACGCTGAACTTGGAATTTTAAGCGAAGAGCAAGAGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTGgtaagttctcttggacttagaataagtcacat-tcatgttgtcattctccttcatttgcatgaa-------gaacttacttttc--attgcaaggctttggtaaaatggtaattaatacatatgttatttgcag---
|||||||||||| || || | ||||||||| || | |   || | ||  ||    ||||||||| | || ||||||||||||||||||||||||||  ||||||||     |     || |   ||   ||| |||  | ||   | |        || ||  |       ||  |||||| |   |||  |||       | |  |  | | ||||   | | ||  ||  |    
ACAACAAAGAATAAAGAATGTTGAACTTGGGATCTCAGTTGATGTGCCTGAAGGGGAACTTCCTGATTTTCCATCATTCATTCCATTCTTGCCTCCCCTGgtaagtatatatacttctacatccagcaccatctcacatggttcatatttaaggagtgtatatatgctattgatattacttgttgaatttgaagttccaaatcagctcattactaatggttctcttgctttaaacag

upper sequence: GLYMA09G36770.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0013g00350.t01 (Vitis vinifera), 5'ss of exon 2
---ACAACAAAGAATTAAAAACGCTGAACTTGGAATTTTAAGCGAAGAGCAAGAGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTGgtaagttctcttggacttagaataagtcacattcatgttgtcattctccttcatttgcatgaagaacttacttttcattgcaaggctttggtaaaatggtaattaatacatatgttatttgcag
   |||||||||||||||||| ||||||||||||||| |||   |||| || || |||||||| |  || || ||||||||||||||||| |||||||| ||||| || | |||          || |   ||   ||  |     |     |||||||| |  ||||| |   | |  |     | ||  |  | |  |||  |    | | |             
GATACAACAAAGAATTAAAAATGCTGAACTTGGAATTCTAA---AAGAACAGGAAAATGAACTCCAAAATTTTCCATCATTCATTCCATTTTTGCCTCCTTTGgtgagctttct---------gatgaactac---cacttccctctaaattttcatttgaaccaagaaatgtgtatcaagctataagccatcctcatgtggggacccttccttc------------

upper sequence: GLYMA09G36770.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0013g00290.t01 (Vitis vinifera), 5'ss of exon 3
ACAACAAAGAATTAAAAACGCTGAACTTGGAATTTTAAGCGAAGAGCAAGAGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTGgtaagttctcttggacttagaataagtcacattcatgttgtcattctccttcatttgcatgaagaacttacttttcattgcaaggctttggtaaaatggtaattaatacatatgttatttgcag
|||||||||||||||||  ||||||||||||||| |||  ||||| ||||| ||||||||||| || || ||||||||||||||||| |||||||| ||||| || | |||          || |   ||   ||  |     |     |||||||| |  |||||  |   |     |  ||| | |   || | ||   |    | |   |           
ACAACAAAGAATTAAAAGTGCTGAACTTGGAATTCTAAAAGAAGAACAAGAAAATGAACTTCCAAATTTTCCATCATTCATTCCATTTTTGCCTCCTTTGgtgagctttct---------gatgaactac---cacttcccactaaattttcatttgaaccaagaatgtgtatcaagctataagccatccttaca-tgaggacccttcctgct-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23057217|gb|BU577892.1|BU577892
EST:     AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTG                         ACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTGgtaagttctc ... ttatttgcagACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|254342696|gb|GR858858.1|GR858858
EST:     TCCTAACTTCCCATCA-TCA-TCCA-TC-TGCCTCCATTG                         ACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: TCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTGgtaagttctc ... ttatttgcagACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|9987763|gb|BE661871.1|BE661871
EST:     AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTG                         ACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGNC
genomic: AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTGgtaagttctc ... ttatttgcagACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|193519696|gb|FK477141.1|FK477141
EST:     AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTG                         ACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTGgtaagttctc ... ttatttgcagACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|298165597|gb|HO011646.1|HO011646
EST:     AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTG                         ACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTGgtaagttctc ... ttatttgcagACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|19270747|gb|BM887003.1|BM887003
EST:     AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTG                         ACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTGgtaagttctc ... ttatttgcagACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|15813355|gb|BI785630.1|BI785630
EST:     AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTG                         ACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTGgtaagttctc ... ttatttgcagACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|13791409|gb|BG654000.1|BG654000
EST:     AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTG                         ACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTGgtaagttctc ... ttatttgcagACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|298195324|gb|HO039155.1|HO039155
EST:     AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTG                         ACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCATATTGCC
genomic: AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTGgtaagttctc ... ttatttgcagACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|298181545|gb|HO025720.1|HO025720
EST:     AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTG                         ACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTGgtaagttctc ... ttatttgcagACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|27424921|gb|CA936441.1|CA936441
EST:     AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTG                         ACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTGgtaagttctc ... ttatttgcagACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|298164288|gb|HO013933.1|HO013933
EST:     AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTG                         ACTTCTGCAAACCTCAAGCAATATTATGCAACC
genomic: AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTGgtaagttctc ... ttatttgcagACTTCTGCAAACCTCAAGCAATATTATGCAACC
EST: gi|5753292|gb|AI960579.1|AI960579
EST:     AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTG                         ACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTGgtaagttctc ... ttatttgcagACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|254342695|gb|GR858857.1|GR858857
EST:     AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTG                         ACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTGgtaagttctc ... ttatttgcagACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|193684207|gb|FK623471.1|FK623471
EST:     GAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTG                         ACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: GAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTGgtaagttctc ... ttatttgcagACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|21285677|gb|BQ473548.1|BQ473548
EST:     AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTG                         ACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTGgtaagttctc ... ttatttgcagACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|15336929|gb|BI497585.1|BI497585
EST:     AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTG                         ACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTGgtaagttctc ... ttatttgcagACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
EST: gi|151400607|gb|EV270421.1|EV270421
EST:     AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTG                         ACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC
genomic: AGAATGAACTTCCTAACTTCCCATCATTCATTCCATTCTTGCCTCCATTGgtaagttctc ... ttatttgcagACTTCTGCAAACCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCC