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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACTATGCAAAAGGGAAAAGAATTGCGTTGTTTATGGATTATGATGGAACTCTTTCACCGATTGTGGATAATCCTGACTGTGCTTTCATGTCCGACAATgtatgtggtactctccttgggtttactatccataataacatcaattgggttttattctattctcatttttctttggctaattacaattctgttaactctgcag

Basic information

species Glycine max
transcript GLYMA09G36570.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G36570.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os10g40555.1 (Oryza sativa), 5'ss of exon 2
AAACTATGCAAAAGGGAAAAGAATTGCGTTGTTTATGGATTATGATGGAACTCTTTCACCGATTGTGGATAATCCTGACTGTGCTTTCATGTCCGACAATgtatg-tggtactctccttgggtttacta-tccataataacatcaattgggttttattc--tattctcatttttctttggctaattacaattctgttaactctgcag
 ||   ||| | ||| |||||| | ||  ||||  | |||||||||||||||||||||||||||||||| ||||||||   |||  | ||||| ||| | ||||  |  | |||  |||  |||   || |||  | ||  |||| |     |||||     | | |  |   | ||    |    |                    
TAATCTTGCCAGAGGTAAAAGATTGGCACTGTTCCTTGATTATGATGGAACTCTTTCACCGATTGTGGACAATCCTGAAAATGCAGTAATGTCTGACGAGgtattctttttctcctcttatgttctttagtcctcattattatcagtgaaaatttatctggcagttttgtaaatattctattcgacag-------------------

upper sequence: GLYMA09G36570.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G178546_T02 (Zea mays), 5'ss of exon 3
AAACTATGCAAAAGGGAAAAGAATTGCGTTGTTTATGGATTATGATGGAACTCTTTCACCGATTGTGGATAATCCTGACTGTGCTTTCATGTCCGACAATgtatgtggtactctccttgggtttactatccataataacatcaattgggttttattctattctcatttttctttggctaattacaattctgttaactctgcag
  |   |||     | |||||  | || |||||| | || ||||| ||||| ||||||||||||||||| ||||||||   ||| || ||||| ||  | ||||||     | ||| |  ||    |    || |  |   || |    ||| | |    | ||  |   | |||  || | |||  |  ||     ||||||
TGATCTTGCTGGGAGTAAAAGGTTGGCATTGTTTCTTGACTATGACGGAACACTTTCACCGATTGTGGACAATCCTGAAAATGCATTAATGTCTGATGAGgtatgt-----tttccctaagtccttttaaaattagcagtccagtgcaatttcagttcgctttc--taaacattg--tattcacagatgcgtg----ctgcag

upper sequence: GLYMA09G36570.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G178546_T01 (Zea mays), 5'ss of exon 3
AAACTATGCAAAAGGGAAAAGAATTGCGTTGTTTATGGATTATGATGGAACTCTTTCACCGATTGTGGATAATCCTGACTGTGCTTTCATGTCCGACAATgtatgtggtactctccttgggtttactatccataataacatcaattgggttttattctattctcatttttctttggctaattacaattctgttaactctgcag
  |   |||     | |||||  | || |||||| | || ||||| ||||| ||||||||||||||||| ||||||||   ||| || ||||| ||  | ||||||     | ||| |  ||    |    || |  |   || |    ||| | |    | ||  |   | |||  || | |||                  
TGATCTTGCTGGGAGTAAAAGGTTGGCATTGTTTCTTGACTATGACGGAACACTTTCACCGATTGTGGACAATCCTGAAAATGCATTAATGTCTGATGAGgtatgt-----tttccctaagtccttttaaaattagcagtccagtgcaatttcagttcgctttc--taaacattg--tattcacag-----------------