Sequence
atgc intronic sequence ATGC exonic sequenceTACTACTATGAGGTTGGACTTGGGAACACAACACGGCAATTTTGGTTTGTGACTCCTCCTGAAATTGGTCCTGATGTGCCATACACATTTGGTCTCATAGgtaagtgtattaatattctatcaaagtaacttggggttgctatgttagctgttatttgatacaagcatattcatgttgataagttgtcataaaagtaggt...
Basic information
species | Glycine max |
transcript | GLYMA09G36360.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G36360.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G16430.2 (Arabidopsis thaliana), 5'ss of exon 3
TACTACTATGAGGTTGGACTTGGGAACACAACACGGCAATTTTGGTTTGTGACTCCTCCTGAAATTGGTCCTGATGTGCCATACACATTTGGTCTCATAGgtaa-gtgtattaatattctatcaaagt---aacttggggttgctatg---ttagctgttatttgatacaagcatattcatgt-tgataagttgtcataaaagtaggt
||||| |||| | | || | || | || || | |||||||| | ||||||||||| || ||||||||||| || ||||| ||||||||||| |||| || || || | ||| || ||||| ||| || || | | | | | || ||| | || || | | | ||
TACTATTATGTGTTAGGTGTGGGACAAACGGAGCGTAAGTTTTGGTTCTTCACTCCTCCTGAGATCGGTCCTGATGTTCCCTACACTTTTGGTCTCATTGgtactgtcctgaaacatattgtcatggttttaacttttaacaaaaatgcattttactagcctctcccatggacttgatcttgtgttgcaaatttttgtttt-gcag--
upper sequence: GLYMA09G36360.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0038g00230.t01 (Vitis vinifera), 5'ss of exon 3
TACTACTATGAGGTTGGACTTGGGAACACAACACGGCAATTTTGGTTTGTGACTCCTCCTGAAATTGGTCCTGATGTGCCATACACATTTGGTCTCATAGgtaagtgtattaatattctatcaaagtaacttggggttgctatgttagctgttatttgatacaagcatattcatgttgataagttgtcataaaagtaggt-----
|| ||||||| ||| || |||| |||| |||| | ||||||||||| ||||||||| || |||| || ||||| |||||||| |||||||| |||||||| || | ||||| | | |||| ||| | ||| | || | | || | | || || || | | | || ||| | || | |
TATTACTATGTGGTCGGGATTGGACACACTCCACGCAAGTTTTGGTTTGTAACTCCTCCTAAAGTTGGCCCAGATGTTCCATACACTTTTGGTCTTATAGgtaaccgt-tcaatatcaaacctgtgtaa-ttgagattgtt-tgaaggttaataacagtt--aattattcagatttggtttagctgttggagttgtggatcaggc
upper sequence: GLYMA09G36360.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0038g00250.t01 (Vitis vinifera), 5'ss of exon 3
TACTACTATGAGGTTGGACTTGGGAACACAACACGGCAATTTTGGTTTGTGACTCCTCCTGAAATTGGTCCTGATGTGCCATACACATTTGGTCTCATAGgtaagtgtattaatattctatcaaagtaacttggggttgctatgttagctgttatttgatacaagcatattcatgttgataagttgtcataaaagtaggt-----
|| ||||||| ||| || |||| |||| |||| | ||||||||||| ||||||||| || |||| || ||||| |||||||| |||||||| |||||||| || | ||| | | | |||| ||| | ||| | || | | || | | || || || | | | || ||| | || | |
TATTACTATGTGGTCGGGATTGGACACACTCCACGCAAGTTTTGGTTTGTAACTCCTCCTAAAGTTGGCCCAGATGTTCCATACACTTTTGGTCTTATAGgtaaccgt-tcaatgtcaaacctgtgtaa-ttgagattgtt-tgaaggttaataacagtt--aattattcagatttggtttagctgttggagttgtggatcaggcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192296454|gb|FG989819.1|FG989819EST: GACTCCTCCTGAAATTGGTCCTGATGTGCCATACACATTTGGTCTCATAG GGGATCTTGGTCAGAGTTTTGATTCAAATAAGACTCTTTCTCACTGTGAAT
genomic: GACTCCTCCTGAAATTGGTCCTGATGTGCCATACACATTTGGTCTCATAGgtaagtgtat ... ttatttgcagGGGATCTTGGTCAGAGTTTTGATTCAAATAAGACTCTTTCTCACTATGAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACTACTATGAGGTTGGACTTGGGAACACAACACGGCAATTTTGGTTTGTGACTCCTCCTGAAATTGGTCCTGATGTGCCATACACATTTGGTCTCATAGgtaagtgtattaatattctatcaaagtaacttggggttgctatgttagctgttatttgatacaagcatattcatgttgataagttgtcataaaagtaggt
- - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggttg