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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTTTGGATGGGAGTCCACCAGCTTATCATTTTGATAGGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAGgtatgccactctccacaaatttccatcagtaattagtcttataaatcaaatttggttcattgttttgcctcacctttttggacaaatcatataaggtttattttcaatcgtttttaatcttaatctatttcatttctactag

Basic information

species Glycine max
transcript GLYMA09G35050.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G35050.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G19420.1 (Arabidopsis thaliana), 5'ss of exon 3
TTTGTTTGGATGGGAGTCCACCAGCTTATCATTTTGATAGGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAGgtatgccact--ctccacaaatttccatcagtaattagtcttataaatcaaatttggttcattgtt----ttgcctcacctttttgga-caaatcatataaggtttattttcaatcgtttttaatcttaatctatttcatttctactag
||||||| ||||| |||||||||||||||||||| ||||| || | |||| | || || || | ||||||| |     ||||||| |  | ||   | |     ||    || ||  ||  ||||     |     || ||  ||| ||    |||    |   ||||| |   ||   | |  ||    |  |  |  || |||     |  | |  || |          
TTTGTTTAGATGGAAGTCCACCAGCTTATCATTTGGATAGAGGTTCTGGAACTGGAATCAATAGTTGGTTGATACAGCTTGAGgttttgctctgctttcttctcttgtgttctgtggttgttcttgc---tttggcttagtatatttttggagttgggagatgattttgaaatgaagtttttgtggaagttaattgagtgtctttggaaatggtttgatttag---------

upper sequence: GLYMA09G35050.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G19420.2 (Arabidopsis thaliana), 5'ss of exon 1
-----------------TTTGTTTGGATGGGAGTCCACCAGCTTATCATTTTGATAGGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAGgtatgccact--ctccacaaatttccatcagtaattagtcttataaatcaaatttggttcattgtt----ttgcctcacctttttgga-caaatcatataaggtttattttcaatcgtttttaatcttaatctatttcatttctactag
                 ||||||| ||||| |||||||||||||||||||| ||||| || | |||| | || || || | ||||||| |     ||||||| |  | ||   | |     ||    || ||  ||  ||||     |     || ||  ||| ||    |||    |   ||||| |   ||   | |  ||    |  |  |  || |||     |  | |  || |          
GTCTTTTGGTTTTGCAGTTTGTTTAGATGGAAGTCCACCAGCTTATCATTTGGATAGAGGTTCTGGAACTGGAATCAATAGTTGGTTGATACAGCTTGAGgttttgctctgctttcttctcttgtgttctgtggttgttcttgc---tttggcttagtatatttttggagttgggagatgattttgaaatgaagtttttgtggaagttaattgagtgtctttggaaatggtttgatttag---------

upper sequence: GLYMA09G35050.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0087g00400.t01 (Vitis vinifera), 5'ss of exon 3
TTTGTTTGGATGGGAGTCCACCAGCTTATCATTTTGATAGGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAGgtatgccactctccacaaatttccatcagtaattagtcttataaatcaaatt-tggttcattgttttgcctcacctttttggacaaatcatataaggtttattttcaatcgtttttaatcttaatctatttcatttctactag
|||| |||||||| || ||||| ||||| ||  | |||| |||||||||  |||||||||||||||||||||||    ||||||||       |   |||| | |   |      || || | || |   | ||  || ||  ||| |       |     |||||  ||  |   || |   ||| |      || ||| |                        
TTTGCTTGGATGGTAGCCCACCTGCTTACCACATGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgta-------ccagacaactgt---ttgaagttttgtttcatgatgtatatagtgattggttgct-------aagaaattggaggaa--agggaaagaaaattatgggattttattact------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213597073|gb|DB968168.1|DB968168
EST:     TTGATAGGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAG                         GGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT
genomic: TTGATAGGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAGgtatgccact ... tttctactagGGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT
EST: gi|18733683|gb|BM527753.1|BM527753
EST:     TTGATAGGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAG                         GGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT
genomic: TTGATAGGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAGgtatgccact ... tttctactagGGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT
EST: gi|21888360|gb|BQ741573.1|BQ741573
EST:     TTGATAGGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAG                         GGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT
genomic: TTGATAGGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAGgtatgccact ... tttctactagGGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT
EST: gi|9986444|gb|BE660552.1|BE660552
EST:     TTGATAGGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAG                         GGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT
genomic: TTGATAGGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAGgtatgccact ... tttctactagGGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT
EST: gi|9898765|gb|BE607733.1|BE607733
EST:     CAGGGATTAACAATTGGTTGGTTGCATTTGAG                         GGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT
genomic: CAGGGATTAACAATTGGTTGGTTGCATTTGAGgtatgccact ... tttctactagGGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT
EST: gi|213614158|gb|DB964902.1|DB964902
EST:     TTGATAGGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAG                         GGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT
genomic: TTGATAGGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAGgtatgccact ... tttctactagGGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT
EST: gi|9820186|gb|BE555696.1|BE555696
EST:     AACAATTGGTTGGTTGCATTTGAG                         GGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT
genomic: AACAATTGGTTGGTTGCATTTGAGgtatgccact ... tttctactagGGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT
EST: gi|15287443|gb|BI471334.1|BI471334
EST:     TTGATAGGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAG                         GGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT
genomic: TTGATAGGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAGgtatgccact ... tttctactagGGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT
EST: gi|15664114|gb|BI701485.1|BI701485
EST:     TTGATAGGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAG                         GGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT
genomic: TTGATAGGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAGgtatgccact ... tttctactagGGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT