Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaacatattttcttgttattttgaaactttttagtaattaccgtgttagtcttttgtgttaaaaagatcaacagattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcag

Basic information

species Glycine max
transcript GLYMA09G34760.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G34760.3 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g37970.1 (Oryza sativa), 5'ss of exon 2
CATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaacatattttcttgttattttgaaactttttagtaattaccgtgttagtcttttgtgttaaaaagatcaacagattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcag
|| ||||| |||||||| || || ||||||   |||||||||||||||||||| ||||| |||||||| ||||| || || |||   ||| | ||  | ||| |  |  |     | | | |        |   | |||| |||| ||    ||||  |   |||     | ||  |   ||| |||    |  | |   | ||| |                                    
CACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccctggcctccctatcgcgcatgactatgttagcaattgccac--tagtactgcatgtgcttga-atttatgaattaaat----acggttatctccttct------------------------------------

upper sequence: GLYMA09G34760.3 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os06g02510.3 (Oryza sativa), 5'ss of exon 2
CATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaacatattttcttgttattttgaaactttttagtaattaccgtgttagtcttttgtgttaaaaagatcaacagattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcag
|| ||||| || ||||| || || ||||||   |||||||||||||||||||| ||||| |||||||| ||||| || || |||   ||| | ||  | |||||  | |  |  | |||||  ||       || | || | ||||              ||||   ||   || | ||  ||   ||  || |      ||||  | |   | ||   |||  |   |||            
CACAACAACGTCATCCCGAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtaaagtgat-tgatctcttgcgat-------ctatctaatgatta--------------tgtg---aatgaatgagcatgttagcttcctact------tgctcgtgagattgtgctgtgtaacatatgc------------

upper sequence: GLYMA09G34760.3 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G409407_T01 (Zea mays), 5'ss of exon 2
CATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaacatattttcttgttattttgaaactttttagtaattaccgtgttagtcttttgtgttaaaaagatcaacagattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcag
|| ||||| |||||||| ||||| ||||||   |||||||||||||||||||| ||||| |||||||| ||||| || || |||   ||| | ||  | ||| |  |  | | | | |||    | ||  | | ||  | ||  |  |||| | |  ||      | |   | | | ||||| |  ||   ||     |    |                                       
CACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagct--cttctgtgcttaccctctttcagccttccaatatgttgcgtgcttgaattcaagacttagttgttta-cagatagt-ttgccatgccctgcaaat---------------------------------------

upper sequence: GLYMA09G34760.3 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G145280_T01 (Zea mays), 5'ss of exon 2
CATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgta-atttaacatattttcttgttattttgaaacttttta--gtaattaccgtgttagtcttttgtgttaaaaagatcaacagattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcag
|| ||||| || ||||| ||||| ||||||   |||||||||||||||||||| ||||| |||||||| ||||| || || |||   ||| | ||  | ||||   | | |        |      ||| |  ||   ||   || ||  | || | |  ||     |         |||  |  | |   |    | ||                                              
CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcaccgccgcccgtccgctctttcagcctacctactatattttgcatgcttgaattccaactagtgtttggcaattggctaataaacagctcat----------------------------------------------

upper sequence: GLYMA09G34760.3 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G081102_T03 (Zea mays), 5'ss of exon 2
CATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACG-ATTGGgtaatttaacat-attttcttgttattttgaaacttttta-gtaattaccgtgttagtcttttgtgttaaaaagatcaacagattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcag
|| ||||| || ||||| ||||| ||||||   |||||||||||||||||||| ||||| |||||||| ||||| || || |||   ||| | || || ||  |  | | |   ||||| | |      |  ||| |||   ||  ||   |  ||     |   |  |||| || |||   |        | |     |                                              
CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcatcgccattttttagcctacctacaacatttcgcgtgcttgttgaattcaaactagctaataaacaggtcacttgtcctgcccattgcaatt----------------------------------------------

upper sequence: GLYMA09G34760.3 (Glycine max), 5'ss of exon 3
lower sequence: AT5G23900.1 (Arabidopsis thaliana), 5'ss of exon 2
CATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACG-ATTGGgtaatttaacatattttcttgttattttgaaactttttagtaattaccgtgttagtcttttgtgttaaaaagatcaacagattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcag
|| ||||| |||||||| | |  |||||| || |||||||||||||| ||||| ||||||||||| || ||||| ||  ||||||||||||||||  |||| || |  |   | |    ||  || ||| ||   ||||  |  | |   |  |||| | |  |  |     |    |    ||   | ||                                                     
CACAACAACGTTATCCCGAGCTCACACTTTCGCAAGCACTGGCAGAATTATGTCAAGACTTGGTTTAACCAGCCTGCCAGGAAGACAAGGAGACGTGTTGgttagtaaagtctctacattttctactttaaatgattttgctcttaattttaatagtgtatgtttcttttgtg--tgatgtgttttctcag-----------------------------------------------------

upper sequence: GLYMA09G34760.3 (Glycine max), 5'ss of exon 3
lower sequence: AT3G49010.5 (Arabidopsis thaliana), 5'ss of exon 2
CATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaacatattttcttgttattttgaaactttttagtaattaccgtgttagtcttttgtgttaaaaagatcaacagattgaat--tagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcag
|| |||||||||||||| || || ||||||   |||||||||||||| ||||| ||||| |||||||| ||||| ||  |||| || || ||| || | ||| | |            | || || |  | |||| | |   |||  | ||||    ||||  ||| | |  |  | |   |||  |  || |||     ||||     |                                   
CACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTGgttagtag----------tagtaatgtcaacacttctga--tattgtcatgttt-cgttttaagtttacactacaatctctttgggtcttattatgttatgttgtacacag----------------------------------

upper sequence: GLYMA09G34760.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0047g01160.t01 (Vitis vinifera), 5'ss of exon 1
CATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaacatattttcttgttattttgaaactttttagtaattaccgtgttagtcttttgt-gttaaaaagatcaacagattgaat-tagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcag
|||||||||||| | || || || ||||||   |||||||||||||||||||| |||||||||||||| || || || || || ||  | ||| || | ||||  |   | | || |||| |   ||  ||  | |  | |  ||  | |     |  | |    ||    |  | ||  || |     ||  |||  ||| |                                          
CATAACAATGTTGTGCCTAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACTTGGTTCAACCAACCTGCCCGCAAAACCCGAAGAAGAGTTGgta--tgggctttttctcttctaggtt--aacttgtccatttcttgtcattgagtttctataccattgtggatttgaatggagtaggcataaaatttgtgggtt-----------------------------------------

upper sequence: GLYMA09G34760.3 (Glycine max), 5'ss of exon 3
lower sequence: PP1S126_52V6.1 (Physcomitrella patens), 5'ss of exon 2
CATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaacatattttcttgttattttgaaactttttagtaattaccgtgttagtcttttgtgttaaaaagatcaacagattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcag
||||||||||||||||| || || ||||||   ||| ||||||| |||||||||| ||| ||||| || ||||| || || |||| ||| ||| ||  |||    ||| |||     |    ||||    ||   ||| || |  | | |||  ||  |||| |     | |||           ||  ||      |||  |  |     |||||                           
CATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGg----ttagcatcccaccgctgtattggtgaa---tttggttacaaac-tgtccgttatttgagactctatgat-----------atgtgtgacagcggtaaccctaggacctttggtg------------------------

upper sequence: GLYMA09G34760.3 (Glycine max), 5'ss of exon 3
lower sequence: PP1S21_106V6.1 (Physcomitrella patens), 5'ss of exon 2
CATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaacatattttcttgttattttgaaactttttagtaattaccgtgttagtcttttgtgttaaaaagatcaacagattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcag
|||||||| || || || || || ||||||   ||| |||||||||||||||||| |||||||||||| ||||| ||||| |||| ||| ||| ||  |||| |       ||   | |||||||  |    ||||| | ||   |    |||| |   ||  || |  ||   | ||   |       |  |  |                                               
CATAACAACGTCATTCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtga---ggtttaggct-ttgttatcctccgtcttttgattatggatta-gttaattaatttagtaatgaaatcccacgcgtgatcaatgcgtctacaaccatag--------------------------------------

upper sequence: GLYMA09G34760.3 (Glycine max), 5'ss of exon 3
lower sequence: PP1S459_9V6.3 (Physcomitrella patens), 5'ss of exon 1
CATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaacatattttcttgttattttgaaactttttagtaattaccgtgttagtcttttgtgttaaaaagatcaacagattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcag
||||||||||| ||||| ||||| ||||||   ||| |||||||||||||||||| ||| |||||||| ||||| ||||| ||||  || ||| ||  |||||  ||  | |  |||  |||      |||  ||| |  | || || ||| ||      | | ||  ||      |||| |    |   | |     ||| ||| ||| ||   |||                         
CATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgta--ttgtcgtgcttttctgt------gaagttttgtttttatgacggtggtacgggcgttttttggaac-----acagttcttgtccatgt-----gtttcttataactc---gaacca----------------------

upper sequence: GLYMA09G34760.3 (Glycine max), 5'ss of exon 3
lower sequence: PP1S47_277V6.1 (Physcomitrella patens), 5'ss of exon 2
CATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaacatattttcttgttattttgaaactttttagtaattaccgtgttagtct--tttgtgttaaaaagatcaac--agattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcag
||||||||||| ||||| |||||||| |||   ||| ||||||| |||||||||| ||| |||||||| ||||| || || |||| ||| ||| ||   ||||       | | |   |||    ||     || |   | || ||  | || ||| |  ||||| ||   |   |  ||  ||  ||  |  || || | ||                                            
CATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggccttacactcctttgaagctt----gctgtaatggaactagtgcgtgagtttcatttgtttttttatttttgacctagggtgtctgcgtgtttaaggc-------------------------------------------

upper sequence: GLYMA09G34760.3 (Glycine max), 5'ss of exon 3
lower sequence: PP1S58_38V6.1 (Physcomitrella patens), 5'ss of exon 2
CATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaacatattttcttgttattttgaaactttttagtaattaccgtgttagtcttttgtgttaaaaagatcaacagattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcag
||||| ||||||||||| || || ||||||   ||| |||||||||||||||||| ||| |||||||| ||||| || || |||| ||| ||| ||  |||||| |    |||       ||| ||| | | |||  |   ||||    ||||||  ||   |  | |      |   ||  | | ||  |  |   |      |  ||  || |||| |                       
CATAATAATGTTATCCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaact----ata-------gttttttcggatcttcctg--aattggt-tgttagctttcccttatta------cggaagtgtaatttttttgtctggaacatctcaaaccctatgaatt-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9898707|gb|BE607675.1|BE607675
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|14991504|gb|BI317177.1|BI317177
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|151411721|gb|EV281532.1|EV281532
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|10236023|gb|BE804971.1|BE804971
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|209719729|gb|BW669236.1|BW669236
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|151412589|gb|EV282401.1|EV282401
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|192296167|gb|FG989752.1|FG989752
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|151412501|gb|EV282313.1|EV282313
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|7232690|gb|AW568044.1|AW568044
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|7588772|gb|AW704560.1|AW704560
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|21677416|gb|BQ629767.1|BQ629767
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|298168634|gb|HO009564.1|HO009564
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|6724510|gb|AW308909.1|AW308909
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|58014722|gb|CX701464.1|CX701464
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|151412263|gb|EV282075.1|EV282075
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCTAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|192314938|gb|FK010756.1|FK010756
EST:     AGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAATATATTCCCCAGACCTACGGCTGGACCTC
genomic: AGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|15337650|gb|BI498306.1|BI498306
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|58022980|gb|CX709721.1|CX709721
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|209707172|gb|BW656790.1|BW656790
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|26049048|gb|CA785501.1|CA785501
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|58014623|gb|CX701365.1|CX701365
EST:     GTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: GTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|18730580|gb|BM525958.1|BM525958
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|4396384|gb|AI495381.1|AI495381
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|9898907|gb|BE607875.1|BE607875
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|10232707|gb|BE801595.1|BE801595
EST:     GGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: GGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|192310330|gb|FK002210.1|FK002210
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|209714112|gb|BW679439.1|BW679439
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|9564279|gb|BE473788.1|BE473788
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|209716856|gb|BW679608.1|BW679608
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|208145647|gb|GD942740.1|GD942740
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|213614480|gb|DB972804.1|DB972804
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|9902923|gb|BE611891.1|BE611891
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|9983837|gb|BE657945.1|BE657945
EST:     TCAATCAGCCAGCACGGAAGACAAGGAGACGATTNN                         NTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGNNCNACGGTTGGANCNN
genomic: TCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|13311686|gb|BG405337.1|BG405337
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|17021889|gb|BM092923.1|BM092923
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|10842871|gb|BF066228.1|BF066228
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|151393189|gb|EV263064.1|EV263064
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|9203646|gb|BE329870.1|BE329870
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|9899177|gb|BE608204.1|BE608204
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|192324141|gb|FK017872.1|FK017872
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|209706115|gb|BW680859.1|BW680859
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|192301798|gb|FG994450.1|FG994450
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|4313307|gb|AI460426.1|AI460426
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|21994666|gb|BQ786194.1|BQ786194
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|10844041|gb|BF067378.1|BF067378
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
EST: gi|192304777|gb|FG998793.1|FG998793
EST:     TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGG                         CTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC
genomic: TGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaacatattttcttgttattttgaaactttttagtaattaccgtgttagtcttttgtgttaaaaagatcaacagattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA