1 5' 3' | 2 5' 3' | 3 5' 3' |
GTCTGGACCAGGTGGCCCATTTAGTTTTTGGAATTTTTCTGAGAAATGGAAGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAGgtaaacatttgttctttattttctttttttcctttttctttttgtttcacacacacactgataggcatgtttgtagaaaggaaatccattgtgtcaatta...
species | Glycine max |
transcript | GLYMA09G34650.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAG AATGGAGATGTATCAAAGCATGAGGCACTTGGAAATGAATGGTTGGCCAAAEST: gi|21677781|gb|BQ630132.1|BQ630132
genomic: AGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAGgtaaacattt ... ttcatttcagAATGGAGATGTATCAAAGCATGAGGCACTTGGAAATGAATGGTTGGCCAAA
EST: AGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAG AATGGAGATGTATCAAAGCATGAGGCACTTGGAAATGAATGGTTGGCCAAAEST: gi|9987491|gb|BE661599.1|BE661599
genomic: AGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAGgtaaacattt ... ttcatttcagAATGGAGATGTATCAAAGCATGAGGCACTTGGAAATGAATGGTTGGCCAAA
EST: AGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAG AATGGAGATGTATCAAAGCATGAGGCACTTGGAAATGAATGGTTGGCCAAAEST: gi|20812607|gb|BQ297085.1|BQ297085
genomic: AGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAGgtaaacattt ... ttcatttcagAATGGAGATGTATCAAAGCATGAGGCACTTGGAAATGAATGGTTGGCCAAA
EST: AGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAG AATGGAGATGTATCAAAGCATGAGGCACTTGGAAATGAATGGTTGGCCAAAEST: gi|209720587|gb|BW654440.1|BW654440
genomic: AGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAGgtaaacattt ... ttcatttcagAATGGAGATGTATCAAAGCATGAGGCACTTGGAAATGAATGGTTGGCCAAA
EST: AGAAGCAGAAG-ATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAG AATGGAGATGTATCAAAGCATGAGGCACTTGGAAATGAATGGTTGGCCAAAEST: gi|27426597|gb|CA938117.1|CA938117
genomic: AGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAGgtaaacattt ... ttcatttcagAATGGAGATGTATCAAAGCATGAGGCACTTGGAAATGAATGGTTGGCCAAA
EST: AGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAG AATGGAGATGTATCAAAGCATGAGGCACTTGGAAATGAATGGTTGGCCAAAEST: gi|151400423|gb|EV270237.1|EV270237
genomic: AGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAGgtaaacattt ... ttcatttcagAATGGAGATGTATCAAAGCATGAGGCACTTGGAAATGAATGGTTGGCCAAA
EST: AGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAG AATGGAGATGTATCAAAGCATGAGGCACTTGGAAATGAATGGTTGGCCAAAEST: gi|298167526|gb|HO012789.1|HO012789
genomic: AGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAGgtaaacattt ... ttcatttcagAATGGAGATGTATCAAAGCATGAGGCACTTGGAAATGAATGGTTGGCCAAA
EST: AGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAG AATGGAGATGTATCAAAGCAEST: gi|24205459|gb|BU964712.1|BU964712
genomic: AGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAGgtaaacattt ... ttcatttcagAATGGAGATGTATCAAAGCA
EST: AGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAG AATGGAGATGTATEST: gi|20812455|gb|BQ296933.1|BQ296933
genomic: AGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAGgtaaacattt ... ttcatttcagAATGGAGATGTAT
EST: AGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAG AATGGAGATGTATCAAAGCATGAGGCACTTGGAAATGAATGGTTGGCCAAAEST: gi|27809213|gb|CB063635.1|CB063635
genomic: AGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAGgtaaacattt ... ttcatttcagAATGGAGATGTATCAAAGCATGAGGCACTTGGAAATGAATGGTTGGCCAAA
EST: AGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAG AATGGAGATGTATCAAAGCATGAGGCACTTGGAAATGAATGGTTGGCCAAAEST: gi|15288136|gb|BI472027.1|BI472027
genomic: AGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAGgtaaacattt ... ttcatttcagAATGGAGATGTATCAAAGCATGAGGCACTTGGAAATGAATGGTTGGCCAAA
EST: AGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGGATACTCACCTCAG AATGGAGATGTATCAAAGCATGAGGCACTTGGAAATGAATGGTTGGNCAAA
genomic: AGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAGgtaaacattt ... ttcatttcagAATGGAGATGTATCAAAGCATGAGGCACTTGGAAATGAATGGTTGGCCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTGGACCAGGTGGCCCATTTAGTTTTTGGAATTTTTCTGAGAAATGGAAGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAGgtaaacatttgttctttattttctttttttcctttttctttttgtttcacacacacactgataggcatgtttgtagaaaggaaatccattgtgtcaatta
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA