Sequence
atgc intronic sequence ATGC exonic sequenceGTTCCCCGACGGCGTCGGTGAATATGTTGATTTGATGCAAGATCTGATCCCAGAAATGAAAGATGGGACTGTGAGAACTGCCATTGATACTGGTTGTGGGgtgagttttacttgtgtcttatttttcttgaggtgtttttatttcatttagattatggcaatgcaaaattgcaattctcagtcaacactccttaaacatc...
Basic information
species | Glycine max |
transcript | GLYMA09G34640.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G34640.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G31850.2 (Arabidopsis thaliana), 5'ss of exon 3
GTTCCCCGACGGCGTCGGTGAATATGTTGATTTGATGCAAGATCTGATCCCAGAAATGAAAGATGGGACTGTGAGAACTGCCATTGATACTGGTTGTGGGgtgagttttacttgtgtc-ttatttttcttgaggtgtttttatttcatttagattatggcaatgcaaaattgcaattctcagtcaacactccttaaacatc
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GTTCCCTCGTGGAGTTAGTCACTATGTTGATTTGATGCAAGATCTGATTCCTGAAATGAAAGACGGAACAGTCAGGACCGCCATTGATACTGGCTGTGGGgttagtctctcttcaactactcaagttctctaatcagttctgatcggtcgaggttataattttccgtggtttct-ttggtag-------------------
upper sequence: GLYMA09G34640.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0033g01120.t01 (Vitis vinifera), 5'ss of exon 4
GTTCCCCGACGGCGTCGGTGAATATGTTGATTTGATGCAAGATCTGATCCCAGAAATGAAAGATGGGACTGTGAGAACTGCCATTGATACTGGTTGTGGGgtgagttttacttgtgtcttatttttcttgaggtgtttttatttcatttagattatggcaatgcaaaattgcaattctcagtcaacactccttaaacatc--------------------------------------------------------------------------
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GTTCCCCAGAGGTGTTGGTGCCTATGTTGATTTGATGCAAGATTTGATTCCAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctgattcatactattgtttcttcacggagttga---tcatatgaaccaattcgataacctattaatctatttgatgtttattctggaagctttgatttatgaccatcacctttgtatatgttcccaaaaattgtgtcacttagtctgtgtaattgctttatttctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13251870|gb|BG362773.1|BG362773EST: CAGAAATGAAAGATGGGACTGTGAGAACTGCCATTGATACTGGTTGTGGG GTTGCTAGCTGGGGTGGTGACTTGTTGGATCGTGGGATTCTAACAATTTCT
genomic: CAGAAATGAAAGATGGGACTGTGAGAACTGCCATTGATACTGGTTGTGGGgtgagtttta ... tttgttatagGTTGCTAGCTGGGGTGGTGACTTGTTGGATCGTGGGATTCTAACAATTTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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GTTCCCCGACGGCGTCGGTGAATATGTTGATTTGATGCAAGATCTGATCCCAGAAATGAAAGATGGGACTGTGAGAACTGCCATTGATACTGGTTGTGGGgtgagttttacttgtgtcttatttttcttgaggtgtttttatttcatttagattatggcaatgcaaaattgcaattctcagtcaacactccttaaacatc
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