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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACTGGGTCAAAGCAAACCTATTTATAATGCATTCAAAGCCATTCAGGAGTCTCCTGATTGGCAGACACTCAGTGATGCTCGAAAACGTATTGTTGAAAgtaagttatcaagatgtctttcagctgtgctgttcttgtgatgtggatttatttgagtactgccatgttttttatgcttaaagttgcttgatattgctat...

Basic information

species Glycine max
transcript GLYMA09G33490.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G33490.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 3
AGACTGGGTCAAAGCAAACCTATTTATAATGCATTCAAAGCCATTCAGGAGTCTCCTGATTGGCAGACACTCAGTGATGCTCGAAAACGTATTGTTGAAAgtaagt----tatcaagatg----tctttcagctgtgctgttct-tgtgatgtggatttatttgagtactgccatgttttttatgcttaaagttgcttgatattgctat
||  |||| ||||||||||| |||||||||||||| ||||| ||||| || |||||||| ||||| ||||| ||||||||||  |||||||| || ||  || |||    | |    |||    | |||      |  |||||  ||||| |||| || |  | |   | |  |  |  | |||    |||  |     |||||     
AGGTTGGGGCAAAGCAAACCCATTTATAATGCATTTAAAGCTATTCAAGAATCTCCTGAGTGGCAAACACTGAGTGATGCTCAGAAACGTATAGTGGACTgtgagtatacttttgtaatggaaattttttgttcattttgttccatgtga-gtgg-ttaaccttatggcaggaaactgatatattacgaaaactaa--aatatt-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209728239|gb|BW651674.1|BW651674
EST:     GTCTCCTGATTGGCAGACACTCAGTGATGCTCGAAAACGTATTGTTGAAA                         GCCAAATAAAGGAGGCGGTTCTTAATGGAGTTTCTCTTGAAGATGA
genomic: GTCTCCTGATTGGCAGACACTCAGTGATGCTCGAAAACGTATTGTTGAAAgtaagttatc ... gcctttgcagGCCAAATAAAGGAGGCGGTTCTTAATGGAGTTTCTCTTGAAGATGA
EST: gi|254348573|gb|GR852252.1|GR852252
EST:     GTCTCCTGATTGGCAGACACTCAGTGATGCTCGAAAACGTATTGTTGAAA                         GCCAAATAAAGGAGGCGGTTCTTAATGGAGTTTCTCTTGAAGATGATAAAA
genomic: GTCTCCTGATTGGCAGACACTCAGTGATGCTCGAAAACGTATTGTTGAAAgtaagttatc ... gcctttgcagGCCAAATAAAGGAGGCGGTTCTTAATGGAGTTTCTCTTGAAGATGATAAAA
EST: gi|308098840|gb|HO760681.1|HO760681
EST:     GTCTCCTGATTGGCAGACACTCAGTGATGCTCGAAAACGTATTGTTGAAA                         GCCAAATAAAGGAGGCGGTTCTTAATGGAGTTTCTCTTGAAGATGATAAAA
genomic: GTCTCCTGATTGGCAGACACTCAGTGATGCTCGAAAACGTATTGTTGAAAgtaagttatc ... gcctttgcagGCCAAATAAAGGAGGCGGTTCTTAATGGAGTTTCTCTTGAAGATGATAAAA