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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTATCTGGATGGCTCATCTCAATGACGATTTTTCTGCTGCTAACGTGCCCGTATTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAAgttagttccttcgcctgacttgactctcctttgatttgttctgtttttgttggtagttatttaatccttgatggaggttttatattcactgcttattgtt...

Basic information

species Glycine max
transcript GLYMA09G32900.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24136763|gb|BU927273.1|BU927273
EST:     CCGTATTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAA                         CCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
genomic: CCGTATTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAAgttagttcct ... tatgtaccagCCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
EST: gi|298192872|gb|HO033306.1|HO033306
EST:     CCGTGTTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAA                         CCATCCCCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
genomic: CCGTATTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAAgttagttcct ... tatgtaccagCCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
EST: gi|298196622|gb|HO041365.1|HO041365
EST:     CCGTGTTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAA                         CCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
genomic: CCGTATTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAAgttagttcct ... tatgtaccagCCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
EST: gi|298199456|gb|HO042819.1|HO042819
EST:     CCGTGTTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAA                         CCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
genomic: CCGTATTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAAgttagttcct ... tatgtaccagCCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
EST: gi|298173828|gb|HO017164.1|HO017164
EST:     CCGTGTTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAA                         CCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
genomic: CCGTATTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAAgttagttcct ... tatgtaccagCCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
EST: gi|298188665|gb|HO035358.1|HO035358
EST:     CCGTGTTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAA                         CCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
genomic: CCGTATTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAAgttagttcct ... tatgtaccagCCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
EST: gi|207766568|gb|GD738784.1|GD738784
EST:     CCGTGTTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAA                         CCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
genomic: CCGTATTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAAgttagttcct ... tatgtaccagCCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
EST: gi|298185141|gb|HO030354.1|HO030354
EST:     CCGTGTTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAA                         CCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
genomic: CCGTATTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAAgttagttcct ... tatgtaccagCCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG
EST: gi|151395592|gb|EV265469.1|EV265469
EST:     CCGTATTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAA                         CCATCCTCCCTAGCAGCACCTCGAGAATGGGTATCCCACACTGATATTCAG
genomic: CCGTATTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAAgttagttcct ... tatgtaccagCCATCCTCCCTAGCAGCACTTCGAGAATGGGTATCCCACACTGATATTCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCTATCTGGATGGCTCATCTCAATGACGATTTTTCTGCTGCTAACGTGCCCGTATTTCGACGAATGACTGCGCTGGTGATGGTTTTTGACATGAATGAAgttagttccttcgcctgacttgactctcctttgatttgttctgtttttgttggtagttatttaatccttgatggaggttttatattcactgcttattgtt

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