1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTTGAAAGCCTTGTCTCAGATCATTGATCCAGACTTTGGAACAGATATTGTTACATGTGGATTTGTGAAAGACCTGCATATTGATAAAGCTCTAGGAGAGgtcttaaaagcataggcctgaaattttctgcaacacacatacatgtaaatgataatgtgttcttaccaaagtttttttcctttgaatctcag
species | Glycine max |
transcript | GLYMA09G31980.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTACATGTGGATTTGTGAAAGACCTGCATATTGATAAAGCTCTAGGAGAG GTATCGTTTCGGCTAGAGCTCACTACACCAGCATGTCCAATCAAGGACGTGEST: gi|213608309|gb|DB963085.1|DB963085
genomic: TTACATGTGGATTTGTGAAAGACCTGCATATTGATAAAGCTCTAGGAGAGgtcttaaaag ... tgaatctcagGTATCGTTTCGGTTAGAGCTCACTACACCAGCATGTCCAATCAAGGACGTG
EST: TTACATGTGGATTTGTGAAAGACCTGCATATTGATAAAGCTCTAGGAGAG GTATCGTTTCGGTTAGAGCTCACTACACCAGCATGTCCAATCAAGGACGTGEST: gi|192332938|gb|FK025035.1|FK025035
genomic: TTACATGTGGATTTGTGAAAGACCTGCATATTGATAAAGCTCTAGGAGAGgtcttaaaag ... tgaatctcagGTATCGTTTCGGTTAGAGCTCACTACACCAGCATGTCCAATCAAGGACGTG
EST: TTACATGTGGATTTGTGAAAGACCTGCATATTGATAAAGCTCTAGGAGAG GTATCGTTTCGGTTAGAGCTCACTACACCAGCATGTCCAATCAAGGACGTGEST: gi|7283383|gb|AW595992.1|AW595992
genomic: TTACATGTGGATTTGTGAAAGACCTGCATATTGATAAAGCTCTAGGAGAGgtcttaaaag ... tgaatctcagGTATCGTTTCGGTTAGAGCTCACTACACCAGCATGTCCAATCAAGGACGTG
EST: TTACATGTGGATTTGTGAAAGACCTGCATATTGATAAAGCTCTACGAGAG GTATCGTTTCGGTTAGAGCTCACTACACCAGCATGTCCAATCAAGGACGTG
genomic: TTACATGTGGATTTGTGAAAGACCTGCATATTGATAAAGCTCTAGGAGAGgtcttaaaag ... tgaatctcagGTATCGTTTCGGTTAGAGCTCACTACACCAGCATGTCCAATCAAGGACGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGAAAGCCTTGTCTCAGATCATTGATCCAGACTTTGGAACAGATATTGTTACATGTGGATTTGTGAAAGACCTGCATATTGATAAAGCTCTAGGAGAGgtcttaaaagcataggcctgaaattttctgcaacacacatacatgtaaatgataatgtgttcttaccaaagtttttttcctttgaatctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA