Sequence
atgc intronic sequence ATGC exonic sequenceATAATGATAATTCGAGGAAGAATAATGATGGGGGGACGATTTAATTCACACGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATACGAGgtgagggttctttctcctgttaaattttccattatttttagtttgtaatgcattttatgtgtgtttaattacatttttctccattgttcatcaaaatttctggtttgtctaacag
Basic information
species | Glycine max |
transcript | GLYMA09G31170.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G31170.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g49770.2 (Oryza sativa), 5'ss of exon 2
----ATAATGATAATTCGAGGAAGAATAATGATGGGGGGACGATTTAATTCACACGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATACGAGgtgagggttctttctcctgttaaattttccattatttttagtttgtaatgcattttatgtgtgtttaattacatttttctccattgttcatcaaaatttctggtttgtctaacag
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GCAGATCATGATGTTTCAGACAAGAGTTCTGTTGGGAGGAA---TGAGCATGTATGATCGGTACCAGGATTGGCGCCTTGATGTTGATAACATGACATACGAGgtttgt-ctctttgccttgtag-------catcacttttcaccaccaccac-caccat-catcatcaattgcttcgttttacag-------------------------------
upper sequence: GLYMA09G31170.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g49770.1 (Oryza sativa), 5'ss of exon 3
ATAATGATAATTCGAGGAAGAATAATGATGGGGGGACGATTTAATTCACACGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATACGAGgtgagggttctttctcctgttaaattttccattatttttagtttgtaatgcattttatgtgtgtttaattacatttttctccattgttcatcaaaatttctggtttgtctaacag
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ATCATGATGTTTCAGACAAGAGTTCTGTTGGGAGGAA---TGAGCATGTATGATCGGTACCAGGATTGGCGCCTTGATGTTGATAACATGACATACGAGgtttgt-ctctttgccttgtag-------catcacttttcaccaccaccac-caccat-catcatcaattgcttcgttttacag-------------------------------
upper sequence: GLYMA09G31170.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g03210.t01 (Vitis vinifera), 5'ss of exon 3
ATAATGATAATTCGAGGAAGAATAATGATGGGGGGACGATTTAATTCACACGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATACGAGgtgagggttctttctcctg--ttaaattttccattatttttagtttgtaatgcattt-tatgtgtgtttaattacatttttctccattgttcatcaaaatttctggtttgtctaacag
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ATTGTGTTGTTTGAAAGCAACTTCTTGATGGGAGGAAGATCAAATGGACATGACCGATACAGGGACTGGAGACTAGATGTTGACAACATGTCATATGAGgtatgtagttttccctcagaactacatcttccctcattct-aattagt--tgcatgcatatgttgatacaatt---ctcctactcatggtggggcaaacag-----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192302536|gb|FG996286.1|FG996286EST: ACGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATACGAG CAATTGCTTGAACTGGGTGAGAGAATCGGTTATGTCAACACTGGGCTCAAA
genomic: ACGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATACGAGgtgagggttc ... tgtctaacagCAATTGCTTGAACTGGGTGAGAGAATCGGTTATGTCAACACTGGGCTCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATAATGATAATTCGAGGAAGAATAATGATGGGGGGACGATTTAATTCACACGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATACGAGgtgagggttctttctcctgttaaattttccattatttttagtttgtaatgcattttatgtgtgtttaattacatttttctccattgttcatcaaaatttctggtttgtctaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA