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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAATATTCTAGCTAATGCTAATTGCAAACTAAAAATATGTGATTTCGGACTTGCTCGAGTTTCATTTAATGAGGCCCCATCTGCTATATTCTGGACCgtaagtattctagcaaattgatgcacttattatttctgttttgcttttgcttctgccttttaagattttctgctggaaagtgcaatcaaattctttatttctgttccagaatcattcttctaaacattttgctgactgattttacctgctcttactaag

Basic information

species Glycine max
transcript GLYMA09G30790.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G30790.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g50120.1 (Oryza sativa), 5'ss of exon 3
AAAAAATATTCTAGCTAATGCTAATTGCAAACTAAAAATATGTGATTTCGGACTTGCTCGAGTTTCATTTAATGAGGCCCCATCTGCTATATTCTGGACCgtaagtattctagcaaattgatgcacttattatttctgttttgcttttgcttctgccttttaagattttctgctggaaagtgcaatcaaattctttatttctgttccagaatcattcttctaaacattttgctgactgattttacctgctcttactaag
 || ||||||||||| |||||| ||||||| || ||  | || |||||||| ||||| ||||| |||||||| ||  ||||||| || ||||||||||| || ||                 ||| |||||| |  ||    | | || |||   |  |  |      | |  ||| |  |  ||| || ||       |  |||| ||                                                  
CAAGAATATTCTAGCCAATGCTGATTGCAAGCTGAAGGTTTGCGATTTCGGCCTTGCCCGAGTGTCATTTAACGATACCCCATCAGCCATATTCTGGACGgttag-----------------gcatttattaatgttgagaagatatttctta-acaatgaacagccatatcttggca--tctaatgaattttccatgcttcgttctag--------------------------------------------------

upper sequence: GLYMA09G30790.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G062761_T02 (Zea mays), 5'ss of exon 3
AAAAAATATTCTAGCTAATGCTAATTGCAAACTAAAAATATGTGATTTCGGACTTGCTCGAGTTTCATTTAATGAGGCCCCATCTGCTATATTCTGGACCgtaagtattctagcaaattgatgcacttattatttctgttttgcttttgcttctgccttttaagattttctgctggaaagtgcaatcaaattctttatttctgttccagaatcattcttctaaacattttgctgactgattttacctgctcttactaag
 || ||||||||||| |||||| | ||||| || || || |||||||| || ||||| || |||||||| |||||  | ||||| || ||||||||||| |||   ||| |   |   |   |||   ||||| | ||||   |  |       | |||    ||||||||  ||  | ||  ||||   | || ||                                                              
CAAGAATATTCTAGCCAATGCTGACTGCAAGCTGAAGATTTGTGATTTTGGCCTTGCCCGCGTTTCATTCAATGACACTCCATCAGCCATATTCTGGACGgtagccattttgatattgttgagcaaa-attatgtttgttgaacagtcaa----gactt----gattttcttatg--atgtagaatcttttgctgtag-------------------------------------------------------------

upper sequence: GLYMA09G30790.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 4
AAAAAATATTCTAGCTAATGCTAATTGCAAACTAAAAATATGTGATTTCGGACTTGCTCGAGTTTCATTTAATGAGGCCCCATCTGCTATATTCTGGACCgtaagtattctagcaaattgatgcacttattatttctgttttgcttttgcttctgccttttaagattttctgctggaaagtgcaatcaaattctttatttctgttccagaatcattcttctaaacattttgctgactgattttacctgctcttactaag
 || || ||||||||||||||| |||||||| | || || |||||||| || || ||||| ||||| ||||| || |||||| | |||||||| ||||| || |||  |||| |  | ||    |   |   | |   ||  ||||   |||     |||| | ||  |          |||   |||  |  ||||| |   ||    |                                                 
GAAGAACATTCTAGCTAATGCTGATTGCAAATTGAAGATCTGTGATTTTGGGCTGGCTCGCGTTTCTTTTAACGATGCCCCAACCGCTATATTTTGGACTgtgagtcatctaactcaatgtgaaagcaaaactgttcattaggcttcctcttaactattttcaaatgctt---------gtgagctcatttcgtttatatggattttgtag------------------------------------------------

upper sequence: GLYMA09G30790.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g02570.t01 (Vitis vinifera), 5'ss of exon 3
AAAAAATATTCTAGCTAATGCTAATTGCAAACTAAAAATATGTGATTTCGGACTTGCTCGAGTTTCATTTAATGAGGCCCCATCTGCTATATTCTGGACCgtaagtattctagcaaattgatgcacttattatttctgttttgcttttgcttctgccttttaagattttctgctggaaagtgcaatcaaattctttatttctgttccagaatcattcttctaaacattttgctgactgattttacctgctcttactaag
|||||||||||| ||||||||  | |||||  | || || |||||||| || |||||||| || ||||| ||||| || ||||| ||||| |||||||| ||| ||| ||| || |    | | |||  | |  | || |    || ||| |  | |    || |||   |  |      |    |   || |||||    | ||  | |   |        ||  |||  || |     ||||  | || || | |||
AAAAAATATTCTTGCTAATGCCGACTGCAAGTTGAAGATTTGTGATTTTGGGCTTGCTCGGGTGTCATTCAATGATGCACCATCAGCTATTTTCTGGACAgtatgtagtcttgcca----aagtactcctgacatttgctgcatttctgcatacggccgagaaaattacttagtctcttttattttatgatactttaaaatt-tttgaaagcta-------gaaactttaactaatcatatttatttactttttcaaag