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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGTAGGTGTGATCAATCTTGGTGGTGAAGTAGGTTGTATGATCAGTGAAGGCCCCTGGGTTTTTGTTGGGATACCCAATTTTGTCAAGgtaagaaagaacacaaataggcatctctttttgtttttctctaattttgtaatctgtaaattttaaaataatgtacttctctctactttagtgaagtttttttgctaatgtatgttctttccactgctgatagcatcataactaatgttctttttggttgatgatattggtgatgcag

Basic information

species Glycine max
transcript GLYMA09G27300.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G27300.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0100g00320.t01 (Vitis vinifera), 5'ss of exon 4
TGTGTAGGTGTGATCAATCTTGGTGGTGAAGTAGGTTGTATGATCAGTGAAGGCCCCTGGGTTTTTGTTGGGATACCCAATTTTGTCAAGgtaagaaagaacacaaataggcatctctttttgtttttctctaattttgtaatctgtaaattttaaaataatgtacttctctctactttagtgaagtttttttgctaatgtatgttctttccactgctgatagcatcataactaatgttctttttggttgatgatattggtgatgcag
||    |||||| | ||||||||||| ||||| || |||||||| ||||| ||||| ||| | ||||| || ||||| ||| |||| |||||  |   |||  | ||     ||||| ||   |||| |||| ||| | ||  || ||   ||   | || | |  || ||| |  ||        |||| | |  |||                                                                     
TGCACTGGTGTGGTTAATCTTGGTGGAGAAGTTGGCTGTATGATTAGTGAGGGCCCATGGTTGTTTGTGGGTATACCAAATGTTGTTAAGgtgggtttgaatgcgaa-----atctccttcc-ttttgctcttattatatatactatagtattattactactatttttttctttttttct------ttttataggaaataag------------------------------------------------------------------

upper sequence: GLYMA09G27300.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0022g02530.t01 (Vitis vinifera), 5'ss of exon 3
TGTGTAGGTGTGATCAATCTTGGTGGTGAAGTAGGTTGTATGATCAGTGAAGGCCCCTGGGTTTTTGTTGGGATACCCAATTTTGTCAAGgtaagaaagaacacaaataggcatctctttttgtttttctctaattttgtaatctgtaaattttaaaataatgtacttctctctactttagtgaagtttttttgctaatgtatgttctttccactgctgatagcatcataactaatgttctttttggttgatgatattggtgatgcag
|     |||||| | ||||||||||| ||||| || |||||||| ||||| ||||| ||| | ||||| || ||||| ||| |||| |||||  |   |||  ||||     ||||| |    |||| |||| ||| | ||  || ||   ||   | ||   |  || |   |  |||        ||||||| ||    |                                                                  
TCCACTGGTGTGGTTAATCTTGGTGGAGAAGTTGGCTGTATGATTAGTGAGGGCCCATGGTTGTTTGTGGGTATACCAAATGTTGTTAAGgtgggtttgaatgcaaa-----atctcctccc-ttttgctcttattatatatactatagtattatcactaccatttttgttgtttttttg-------ttttttgataggaaac-----------------------------------------------------------------