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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAAACAATATCTCTGTTGGTGCTTCTGGTGCTCTATTTGGACTTCTTGGTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataaagtcattggttcccatcctatttttgttttctgtgtgtttgttagttcttttgaaaaggaaaatgattaatgttatgaaaagattgacaa...

Basic information

species Glycine max
transcript GLYMA09G26610.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G26610.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os09g35730.1 (Oryza sativa), 5'ss of exon 3
TAGAAACAATATCTCTGTTGGTGCTTCTGGTGCTCTATTTGGACTTCTTGGTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataaagtcattggttcccatcctatttttgttttctgtgtgtttgttagttcttttgaaaaggaaaatgattaatgttatgaaaagattgacaa
||  ||| | ||||||||||| || ||||| ||| |||||||||| |||||  |||||||||| || ||||| |  ||||||| ||||||| |||| ||||| |||| || |  || | | | ||| | |||||   | |     || ||| |  || ||||||  | |  |||    | | ||                
TAATAACTACATCTCTGTTGGAGCCTCTGGAGCTTTATTTGGACTGCTTGGATCAATGCTTTCTGAGCTTATTATGAACTGGACTATTTATTCCAACAAGgttagta-aatgagatagatgcacatac-attttcactattcagttgcttgatgtttgttttgatcaagctaat--ccactcttgcag------------

upper sequence: GLYMA09G26610.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G033937_T01 (Zea mays), 5'ss of exon 3
TAGAAACAATATCTCTGTTGGTGCTTCTGGTGCTCTATTTGGACTTCTTGGTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataaagtcattggttcccatcctatttttgttttctgtgtgtttgttagttcttttgaaaaggaaaatgattaatgttatgaaaagattgacaa
 |  ||| | |||||||||||||||||||| ||| ||||||| || |||||  | |||||||| || ||  |||  ||||||| ||| ||  |||| ||||  |||| ||  | |  | |    ||    ||| | || ||    || ||| ||||  ||| |       |  | |||  || | |   |          
GAATAACTACATCTCTGTTGGTGCTTCTGGAGCTTTATTTGGCCTGCTTGGATCCATGCTTTCTGAGCTACTCATGAACTGGACTATATACTCCAACAAGgccagtacaat-taacagataaatatatactttattttatccagctgcttgatagtcatttagctcgtatacttaatt--tgctcttgcag---------

upper sequence: GLYMA09G26610.2 (Glycine max), 5'ss of exon 3
lower sequence: AT5G07250.2 (Arabidopsis thaliana), 5'ss of exon 3
TAGAAACAATATCTCTGTTGGTGCTTCTGGTGCTCTATTTGGACTTCTTGGTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataaa---gtcattggttcccatcctatttttgttttctgtgtgtttgttagttcttttgaaaaggaaa-atgattaatgttatgaaaagattgacaa
 ||||||| |||||||||||| |||||||||||||| ||||| || |||||  ||||||| || |||||| |||| |||||||  || ||  | || ||||| | ||  ||   |   ||  || | | | ||    |   | |    |||| | |  |  || |||   |   | |||    |  ||     |    ||    
CAGAAACAGTATCTCTGTTGGAGCTTCTGGTGCTCTTTTTGGCCTCCTTGGCTCAATGCTCTCTGAACTTTTCACCAACTGGACAATCTACTCTAACAAGgttaataccaatctgcttttcatttcaaacatacaaatcactccatcatgttggctcatgtttctgatctgagcatatgtaccagattgctgcactcctg----

upper sequence: GLYMA09G26610.2 (Glycine max), 5'ss of exon 3
lower sequence: AT5G07250.1 (Arabidopsis thaliana), 5'ss of exon 3
TAGAAACAATATCTCTGTTGGTGCTTCTGGTGCTCTATTTGGACTTCTTGGTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataaa---gtcattggttcccatcctatttttgttttctgtgtgtttgttagttcttttgaaaaggaaaatgattaatgttatgaaaagattgacaa
 ||||||| |||||||||||| |||||||||||||| ||||| || |||||  ||||||| || |||||| |||| |||||||  || ||  | || ||||| | ||  ||   |   ||  || | | | ||    |   | |    |||| | |  |  || |||   | |  ||   ||                     
CAGAAACAGTATCTCTGTTGGAGCTTCTGGTGCTCTTTTTGGCCTCCTTGGCTCAATGCTCTCTGAACTTTTCACCAACTGGACAATCTACTCTAACAAGgttaataccaatctgcttttcatttcaaacatacaaatcactccatcatgttggctcatgtttctgatctg-agcatatgtaccag-----------------

upper sequence: GLYMA09G26610.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0100g00640.t01 (Vitis vinifera), 5'ss of exon 3
TAGAAACAATATCTCTGTTGGTGCTTCTGGTGCTCTATTTGGACTTCTTGGTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataaagtcattggttcccatcctatttttgttttctgtgtgtttgttagttcttttgaaaaggaaaatgattaatgttatgaaaagattgacaa
|  ||| |  ||||||||||| |||||||||||||| ||||| ||| | || |||||||||||||| ||||| |||||||||   || ||||| || | |||||| |  |  |       |    || || |  | |   || || | |  ||||   | ||           |                          
TCAAAATAGCATCTCTGTTGGGGCTTCTGGTGCTCTTTTTGGGCTTTTGGGAGCAATGCTTTCAGAGCTTATTACAAACTGGTCCATGTATACAAACAGGgtgagca--atctagcccactgttgtcttactcct-taccctttgagataattagccttgtttgttgcttttgtag------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208205195|gb|GE004038.1|GE004038
EST:     GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG                         GCAGCTGCTTTGTTCACACTTCTGTT-AT-ATTGTCATCAATCTTGCCATT
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: gi|193477386|gb|FK441857.1|FK441857
EST:     GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG                         GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: gi|208195977|gb|GD988140.1|GD988140
EST:     GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG                         GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: gi|207729643|gb|GD707749.1|GD707749
EST:     CAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG                         GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
genomic: CAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: gi|6454385|gb|AW185068.1|AW185068
EST:     GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG                         GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: gi|193679314|gb|FK619300.1|FK619300
EST:     GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG                         GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: gi|208249423|gb|GE050450.1|GE050450
EST:     GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG                         GCAGCTGCTTTGTTCACACTTCTGCTTATTATTGTCATCAATCTTGCCATT
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: gi|207766706|gb|GD738334.1|GD738334
EST:     GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG                         GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: gi|207732792|gb|GD713537.1|GD713537
EST:     AGTATTTATACCAATAAG                         GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
genomic: AGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: gi|208282257|gb|GE076855.1|GE076855
EST:     GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG                         GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: gi|208227406|gb|GE025053.1|GE025053
EST:     GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG                         GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: gi|207805140|gb|GD778677.1|GD778677
EST:     GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG                         GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: gi|208297763|gb|GE094518.1|GE094518
EST:     GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG                         GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: gi|208248377|gb|GE048074.1|GE048074
EST:     ATCACAAACTGGAGTATTTATACCAATAAG                         GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
genomic: ATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: gi|208112685|gb|GD909708.1|GD909708
EST:     GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG                         GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: gi|193548681|gb|FK505800.1|FK505800
EST:     GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG                         GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: gi|208288768|gb|GE086573.1|GE086573
EST:     GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG                         GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
EST: gi|208261221|gb|GE058675.1|GE058675
EST:     GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAG                         GCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT
genomic: GTGCAATGCTTTCAGAACTTATCACAAACTGGAGTATTTATACCAATAAGgtgagtataa ... cattttgcagGCAGCTGCTTTGTTCACACTTCTGTTTATTATTGTCATCAATCTTGCCATT