Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGTATGGAGTTTTGGGCTAGATGGGCTCACAGGGCTCTATGGCATGCTTCCCTGTGGCACATGCATGAGgtaagctttcaattggttcatctttcctcggaatcctgtctctcgttcactgtttaagtcaatttagtttttttttcttttttttgttaaaatgtgttgt...

Basic information

species Glycine max
transcript GLYMA09G24530.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G24530.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G25700.2 (Arabidopsis thaliana), 5'ss of exon 3
GTGGGTATGGAGTTTTGGGCTAGATGGGCTCACAGGGCTCTATGGCATGCTTCCCTGTGGCACATGCATGAGgtaagctttcaattggttcatctttcctcggaatcctgtctctcgttcactgtttaagtcaatttagtttttttttcttttttttgttaaaatgtgttgt
|| |||||||| || ||||| ||||||||||| || ||||| ||||| ||||| || ||| | ||||||||||| |   ||   ||| |  |  ||  |     ||| || || ||                 ||||   |||| || |                       
GTTGGTATGGAATTCTGGGCAAGATGGGCTCATAGAGCTCTGTGGCACGCTTCTCTATGGAATATGCATGAGgtta--ctttgcttgctgaaaattctc-----atcatgactatccaatttcaaaccgcctgatttgaattttgttgcag---------------------

upper sequence: GLYMA09G24530.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G52570.1 (Arabidopsis thaliana), 5'ss of exon 3
GTGGGTATGGAGTTTTGGGCTAGATGGGCTCACAGGGCTCTATGGCATGCTTCCCTGTGGCACATGCATGAGgtaagctttcaattggttcatctttcctcggaatcctgtctctcgttcactgtttaagtcaatttagtttttttttcttttttttgttaaaatgtgttgt
|| || |||||||||||||| ||||||||||| || ||||| ||||||| |||  | ||| ||||||||||||||    ||  |||  |||   ||     ||  |    | ||  ||| |||| | |   ||| |||    | ||         || ||    ||||    
GTTGGGATGGAGTTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGATTCTTTATGGAACATGCATGAGgta----tttcattttttctcattattctggtttttcttttccggtttactgctaa---caaattaagaatattcatagccggttattggtttgtggcag

upper sequence: GLYMA09G24530.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0050g01090.t01 (Vitis vinifera), 5'ss of exon 3
GTGGGTATGGAGTTTTGGGCTAGATGGGCTCACAGGGCTCTATGGCATGCTTCCCTGTGGCACATGCATGAGgtaagctttcaattggtt-catctttcctcggaatcctgtctctcgttcactgtttaagtcaatttagtttttttttcttttttttgttaaaatgtgttgt--------------------------------
|| || |||||||| ||||| |||||||||||||  ||||| ||||| || ||| | ||||||||||| |||||   | | | | |  || | || ||| ||  || |   |||   | || |||   || ||    | |   |||| ||  |        |     | || |                                
GTAGGCATGGAGTTCTGGGCGAGATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAGgttttcctcctactcctttcctcattcttcttaaacacctct---ggtcgctgag-aaatcttcctggacattttctcggtaaccaaacagtggattttctgtttgatcattctaaaaccttttggattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192299479|gb|FG988763.1|FG988763
EST:     ATGGGGCTCACAGGGCTCTATGGCATGCTTCCCTGTGGCACATGCATGAG                         TCCCATCATCGACCAAGAGAAGGGCCCTTCGAGCCTAACGATGTATTTGCA
genomic: ATGGG-CTCACAGGGCTCTATGGCATGCTTCCCTGTGGCACATGCATGAGgtaagctttc ... tcacttgcagTCCCATCATCGACCAAGAGAAGGGCCCTTCGAGCTTAACGATGTATTTGCA
EST: gi|14992046|gb|BI317719.1|BI317719
EST:     GATGGGCTCACAGGGCTCTATGGCATGCTTCCCTGTGGCACATGCATGAG                         TCCCATCATCGACCAAGAGAAGGGCCCTTCGAGCTTAACGATGTATTTGCA
genomic: GATGGGCTCACAGGGCTCTATGGCATGCTTCCCTGTGGCACATGCATGAGgtaagctttc ... tcacttgcagTCCCATCATCGACCAAGAGAAGGGCCCTTCGAGCTTAACGATGTATTTGCA
EST: gi|27446214|gb|CA953337.1|CA953337
EST:     GATGGGCTCACAGGGCTCTATGGCATGCTTCCCTGTGGCACATGCATGAG                         TCCCATCATCGACCAAGAGAAGGGCCCTTCGAGCTTAACGATGTATTTGCA
genomic: GATGGGCTCACAGGGCTCTATGGCATGCTTCCCTGTGGCACATGCATGAGgtaagctttc ... tcacttgcagTCCCATCATCGACCAAGAGAAGGGCCCTTCGAGCTTAACGATGTATTTGCA