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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCTTACATGATTGAGATTATGTTCTCTGATCACATCCAGATATCAAATCTCACTTTGATCGATTCTCCATCTTGGTTTGTCCATCCAATTTACAGCAGgtttgacaagcattttcggttgcctagatggttaatcttaatgcacaatattttctgttattctaataccccctatatatctccacag

Basic information

species Glycine max
transcript GLYMA09G24470.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G24470.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0050g01110.t01 (Vitis vinifera), 5'ss of exon 8
GGCCTTACATGATTGAGATTATGTTCTCTGATCACATCCAGATATCAAATCTCACTTTGATCGATTCTCCATCTTGGTTTGTCCATCCAATTTACAGCAGgtttgacaagcattt---tcggttgcctagatggtta-atcttaatgcacaatattt--tctgttattctaataccccctatatatctccacag-------------
|||||||| |||| ||||| ||||||||||||||  |||||||||| || || || |||||||| || ||||| |||  |||||| ||  | ||| ||||||||||   || |||    |  ||  |    ||  || | ||| ||   |||  ||    |  || |||| |||         ||       |              
GGCCTTACTTGATAGAGATAATGTTCTCTGATCAGGTCCAGATATCGAACCTTACATTGATCGACTCCCCATCATGGAATGTCCACCCCGTCTACTGCAGgtttgatgggcttttagaccaattctcactttgaatataccttgatttccaaacttcagcccctttttctcatatttgtatggtactgattgaaattgaaattgcag

upper sequence: GLYMA09G24470.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0050g01110.t01 (Vitis vinifera), 5'ss of exon 15
GGCCTTACATGATTGAGATTATGTTCTCTGATCACATCCAGATATCAAATCTCACTTTGATCGATTCTCCATCTTGGTTTGTCCATCCAATTTACAGCAGgtttgacaagcattttcg--------gttgcctagatggttaatctta----------atgcacaatattttctgttat---tctaataccccctatatatc--tccacag
| || ||| |||| ||||| |||| |||||||||  ||||||| || || || | ||||||||| |||||||| |||  ||| ||||| | |||||||||||||  |     || ||          |    | ||   |  || ||           || || | |   || | ||||   |||  |||    |  |   |  |   |||
GACCCTACTTGATAGAGATCATGTACTCTGATCAGGTCCAGATTTCTAACCTTATTTTGATCGACTCTCCATCATGGAATGTTCATCCCACTTACAGCAGgtttccccctttttctctctgtattcatcatttggaatttacattttgtcagagtcgtattcatagtcccttttcttatgtttctggtacttgttgaactccaatttgcag

upper sequence: GLYMA09G24470.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0050g01110.t01 (Vitis vinifera), 5'ss of exon 4
GGCCTTACATGATTGAGATTATGTTCTCTGATCACATCCAGATATCAAATCTCACTTTGATCGATTCTCCATCTTGGTTTGTCCATCCAATTTACAGCAGgtttgacaagcattttcggttgcctagatgg--ttaatcttaatgcacaatattttctgt------tattctaataccccctatatatctccacag
|||| ||| ||||||| || ||||  ||  ||||  | ||||||||||| || || ||||||||||||||||| |||  ||| |||||  |||| |||||||| ||    |  ||    ||   ||  | |  || ||||| |  ||    ||| ||  |      | |||| ||||  | ||| |    |  |||
GGCCCTACTTGATTGAAATCATGTATTCAAATCATGTTCAGATATCAAACCTTACATTGATCGATTCTCCATCATGGAATGTTCATCCTGTTTATAGCAGgtt-gatcttctcttcaatttttttactttggctttatcttgaaacattcaattatcaatagcttgttttctcatacttc-tatgtgaaactgcag