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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATGAAAGATGGTTGGGGTCTGGCAACTGATGGAAAAGTCTTGTTTGGAAGTGATGGTAGTTCAACATTGTATCAAATTGATCCTCAAACATTTAAAGgtttgtctgtccattgaagttctattcctttcctttcaccatttatgtgcaaagccccattcctaaacctttttgggtcgtcctgctttcaaacttgacaatgctttgtgtttgctttgaatttagatgaaacttaacactgctctcttttctgtag

Basic information

species Glycine max
transcript GLYMA09G24430.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G24430.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G011893_T01 (Zea mays), 5'ss of exon 6
GCTATGAAAGATGGTTGGGGTCTGGCAACTGATGGAAAAGTCTTGTTTGGAAGTGATGGTAGTTCAACATTGTATCAAATTGATCCTCAAACATTTAAAGgtttgtctgtccattgaagttctattcctttcctttcaccatttatgtgcaaagccccattcctaaacctttttgggtcgtcctgctttcaaacttgacaatgctttgtgtttgctttgaatttagatgaaacttaacactgctctcttttctgtag
   |||  |||||||||||||||||| ||||||||||||||  | ||||| |||||||| |  ||||   ||||| |  | ||| |  |  || || ||||||  | | ||  |     |  |||||  ||    |    |||| | |           |  | ||   ||||   |  |                                                                             
AAAATGCGAGATGGTTGGGGTCTGGCGACTGATGGAAAAGTTCTTTTTGGCAGTGATGGCACCTCAATGCTGTATAAGCTGGATTCAAAGTCACTTGAAGgttactat-tctttctgcttgatattctattagggtttaaatttctttttcttttatgctgaccaatttttttcatgcag-----------------------------------------------------------------------------

upper sequence: GLYMA09G24430.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G25720.1 (Arabidopsis thaliana), 5'ss of exon 6
GCTATGAAAGATGGTTGGGGTCTGGCAACTGATGGAAAAGTCTTGTTTGGAAGTGATGGTAGTTCAACATTGTATCAAATTGATCCTCAAACATTTAAAGgtttgtctgtc-cattgaagttctattcctttcctttcaccatttatgtgcaaagccccattcctaaacctttttgggtcgtcctgctttcaa-acttgacaatgctttgtgtttgctttgaatttagatgaaacttaacactgctctcttttctgtag
  |||||||||||| ||||| ||||| || ||||||||||  || |||||||||||||| | ||| ||||| ||||  || || ||||||||| | |||||||| |   |   | |||     | ||  |  ||||   ||| |||  |          |||     |  |   | ||  ||  |   || |  | || |   ||  |  | | |||                                          
CATATGAAAGATGGATGGGGACTGGCTACCGATGGAAAAGCGTTATTTGGAAGTGATGGCACTTCTACATTATATCGGATGGACCCTCAAACAATGAAAGgtttcttgcttatactgattaagtttttgtgcccttgagccacttactta---------att-----atttacatagggagtagtatatttagcattttattgtgtctcttctctgcag----------------------------------------

upper sequence: GLYMA09G24430.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0050g01140.t01 (Vitis vinifera), 5'ss of exon 6
GCTATGAAAGATGGTTGGGGTCTGGCAACTGATGGAAAAGTCTTGTTTGGAAGTGATGGTAGTTCAACATTGTATCAAATTGATCCTCAAACATTTAAAGgt-ttgtctgtcca-----ttgaagttctattcctttcctttcaccatttatgtgcaaagccccattcctaaacctttttgggtcgtcctgctttcaaacttgacaatgctttgtgtttgctttgaatttagatgaaacttaacactgctctcttttctgtag
  ||||   ||||||||||| ||||||||| ||||  |||| ||||||||||||||||| | ||| ||| ||||||| |||||||||||| || | |||||| || | | | ||     ||  ||||| | | ||||  | | || |||||| |   | |          ||   ||| |   || |  ||   |  |                                                                 
CATATGCGGGATGGTTGGGGACTGGCAACTAATGGGGAAGTTTTGTTTGGAAGTGATGGAACTTCGACACTGTATCAGATTGATCCTCAATCAATGAAAGgtcttttttatacaaattctttcagttccagtacttttttctaacaatttatttttgaggtagaggctacaattttttctctttccttttgggatggagg---------------------------------------------------------------