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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACAACAGGTGCTCGGGAAGCTGCTTTCAGAAACATCAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttttaacattcctattcatggtgtgtacattttctgatgtaattttgattttttttttgttggttttgctgaatgacattactgtatttcag

Basic information

species Glycine max
transcript GLYMA09G15680.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G15680.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os11g29190.4 (Oryza sativa), 5'ss of exon 3
TAACAACAGGTGCTCGGGAAGCTGCTTTCAGAAACATCAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttttaacattcctattcatggtgtgtacattttctgatgtaattttgattttttttttgttggttttgctgaatgacattactgtatttcag
                |||    || ||||| ||||||||||| |||||||| ||| | ||||| || ||||||||||| || || || |||||||||||||| |       |||||     |||||||   |     || |  |     |   |     || |||     | ||     |||  | | ||| ||||||
----------------GGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaac-----acattg----tcatggtacatcttgctttttgttcggatgataccaggttattgacacatctg-----tgatctaattgtgtttcag

upper sequence: GLYMA09G15680.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os11g29190.2 (Oryza sativa), 5'ss of exon 3
TAACAACAGGTGCTCGGGAAGCTGCTTTCAGAAACATCAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttttaacattcctattcatggtgtgtacattttctgatgtaattttgattttttttttgttggttttgctgaatgacattactgtatttcag
| || || |||||  ||||    || ||||| ||||||||||| |||||||| ||| | ||||| || ||||||||||| || || || |||||||||||||| |       |||||     |||||||   |     || |  |     |   |     || |||     | ||     |||  | | ||| ||||||
TCACCACTGGTGCCAGGGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaac-----acattg----tcatggtacatcttgctttttgttcggatgataccaggttattgacacatctg-----tgatctaattgtgtttcag

upper sequence: GLYMA09G15680.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g01060.1 (Oryza sativa), 5'ss of exon 3
TAACAACAGGTGCTCGGGAAGCTGCTTTCAGAAACATCAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttttaacattcctattcatggtgtgtacattttctgatgtaattttgattttttttttgttggttttgctgaatgacattactgtatttcag
| || || || ||  ||||   ||| || || ||||||||||| |||||||| ||| | |||||||| || || ||||| || || || |||||||||||||| |  ||    | |  |  || |||   ||      | ||||   |    || | |  || |  |  |||                           
TCACCACTGGCGCCAGGGAGAGTGCCTTTAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatctt---gcttctcatttgatgaaatgagg--ctactgacacatccatgctctaattctgatatgttacag-----------------------

upper sequence: GLYMA09G15680.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0043g00440.t01 (Vitis vinifera), 5'ss of exon 4
TAACAACAGGTGCTCGGGAAGCTGCTTTCAGAAACATCAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtata------ctttttaacattcct------attcatggtgtgtacattttctgatgtaattttgattttttttttgtt--ggtttt-------gctgaatgacattactgtatttcag-----------
| || || |||||||| ||  |||| ||||| |||||||||||||| |||||||||||||| |||||||| ||||| ||||| || ||||||||||||||||| |      |||    | ||  ||      ||  || |     |   | |||| | | | |  | | | ||   | ||  ||| ||       | ||  ||||  |  | |||| ||            
TCACTACTGGTGCTCGCGAGTCTGCATTCAGGAACATCAAGACAATAGCTGAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagatagcttagatatatctcttgaaaaatatattgcactgattctctctgtttttagtgagttctgttccctattctggtcttataatatgttggctgactgtgttatattacatgtatatctcag

upper sequence: GLYMA09G15680.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g07220.t01 (Vitis vinifera), 5'ss of exon 4
TAACAACAGGTGCTCGGGAAGCTGCTTTCAGAAACATCAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttttaacattcctattcatggtgtgtacattttctgatgtaattttgattttttttttgttggttttgctgaatgacattactgtatttcag
| || || || || || ||| |||||||||| ||||| |||||||| |||||||| |||||||||||||| || ||||| || |||||||||||||||||||| |      ||    |  |||     | | |||  ||| |    | |  |   || | |  |    | ||    | |  | |||| | |        
TCACTACCGGAGCCCGAGAATCTGCTTTCAGGAACATAAAGACAATAGCTGAATGTTTGGCTGATGAACTCATCAATGCTGCAAAAGGTTCATCCAACAGgtacaaa----aaggcccacatt-----tttataccatttat----tcacctctgttctctgctaaccgtttgcaattatcggcatttcag--------

upper sequence: GLYMA09G15680.2 (Glycine max), 5'ss of exon 3
lower sequence: PP1S10_385V6.1 (Physcomitrella patens), 5'ss of exon 3
TAACAACAGGTGCTCGGGAAGCTGCTTTCAGAAACATCAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttttaacattcctattcatggtgtgtacattttctgatgtaattttgattttttttttgttg-gttttgctgaa-tgaca-----ttactg--tatttcag
| || || ||||| || ||  |||||||||| ||||||||||| ||||| || ||||||||||| ||| | ||||| ||||||||||| || ||||||||||| | |  || | |   |  |   | || || |     | ||  || ||| || |||  |   ||||    ||  ||| | ||| |     ||  ||  | || |||
TTACTACTGGTGCGCGAGAGTCTGCTTTCAGGAACATCAAGACCATTGCAGAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgcttgagacaaccttgttttgtctgaattacatatggcgtcattctgttttgatacctgttacacttctctggactgataaaaggttgttgcttgttccag

upper sequence: GLYMA09G15680.2 (Glycine max), 5'ss of exon 3
lower sequence: PP1S400_33V6.1 (Physcomitrella patens), 5'ss of exon 3
TAACAACAGGTGCTCGGGAAGCTGCTTTCAGAAACATCAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttttaacattcctattcatggtgtgtac--attttctgatgtaattttgattttttttttgttggttttgctgaatgacattactgtatttcag
| || || || || || ||  ||||||| |||||||||||||| |||||||| ||||||||||||||  | ||||| ||||| || ||||| || |||||||||   |  | ||       |    |   | |||   || | ||  | |    |  || |  |    ||  | |  ||    |  | | || | || |||
TCACCACTGGCGCACGAGAGTCTGCTTTTAGAAACATCAAGACCATTGCTGAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatagttacgggaaagtcttcgacatttacttgttctttggagcagaaattgttatcctaccctttttctgacttgtgggtaattcttttttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192334743|gb|FK025920.1|FK025920
EST:     GAATACTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|192327535|gb|FK020610.1|FK020610
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|254343590|gb|GR857346.1|GR857346
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|19269574|gb|BM885830.1|BM885830
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|9203832|gb|BE330056.1|BE330056
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGA
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGA
EST: gi|24135960|gb|BU926470.1|BU926470
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|23734935|gb|BU765722.1|BU765722
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|192312332|gb|FK005336.1|FK005336
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|17519574|gb|BM188616.1|BM188616
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|31467470|gb|CD409498.1|CD409498
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|214009848|gb|DB987992.1|DB987992
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|192332359|gb|FK026024.1|FK026024
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGACTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|254328132|gb|GR835097.1|GR835097
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|192311061|gb|FK004428.1|FK004428
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAG-ATGAAATTGAGAGAGTTGCCAAG-CTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|6846825|gb|AW349115.1|AW349115
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|8286361|gb|BE023920.1|BE023920
EST:     AAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: AAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|31306759|gb|CD391962.1|CD391962
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|31463293|gb|CD405321.1|CD405321
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|58023841|gb|CX710582.1|CX710582
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|254343589|gb|GR857345.1|GR857345
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|23733440|gb|BU764919.1|BU764919
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|207803430|gb|GD773173.1|GD773173
EST:     CTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: CTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|192311060|gb|FK004427.1|FK004427
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAG-ATGAAATTGAGAGAGTTGCCAAG-CTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|17023175|gb|BM094209.1|BM094209
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAA
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAA
EST: gi|16105889|gb|BI893629.1|BI893629
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|51334878|gb|CO978744.1|CO978744
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|193632602|gb|FK580968.1|FK580968
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|209709871|gb|BW657269.1|BW657269
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|11690349|gb|BF598025.1|BF598025
EST:     AAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: AAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|193420474|gb|FK390033.1|FK390033
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|209717138|gb|BW671445.1|BW671445
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|31456812|gb|CD398840.1|CD398840
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|58023313|gb|CX710054.1|CX710054
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|17964112|gb|BM270852.1|BM270852
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|31463564|gb|CD405592.1|CD405592
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|15287563|gb|BI471454.1|BI471454
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|9899042|gb|BE608010.1|BE608010
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|31476291|gb|CD418319.1|CD418319
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
EST: gi|12774060|gb|BG238995.1|BG238995
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttt ... tgtatttcagTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAACAACAGGTGCTCGGGAAGCTGCTTTCAGAAACATCAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttttaacattcctattcatggtgtgtacattttctgatgtaattttgattttttttttgttggttttgctgaatgacattactgtatttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT