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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTATTATGATATCCGTGCTGCTCGAACAGCTATGCGTTCATTACAGAACAAACCTCTACGGCGCAGGAAACTAGACATTCATTTCTCAATACCAAAGgttttttacaaacttaaagttcttgtaatttatttttttattgattgaataccctgacattattattctcttggctttcttttcttccacatcccag

Basic information

species Glycine max
transcript GLYMA09G11630.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G11630.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv10s0003g02670.t01 (Vitis vinifera), 5'ss of exon 5
ATCCTATTATGATATCCGTGCTGCTCGAACAGCTATGCGTTCATTACAGAACAAACCTCTACGGCGCAGGAAACTAGACATTCATTTCTCAATACCAAAGgttttttacaaacttaaagtt-cttgtaatttatttttttattgattgaataccctgacattattattctcttggctttcttttcttccacatcccag
||| || ||||| ||||||||||| ||||| ||||||||| ||||||| ||||| ||  | || || ||||||||||||||||| || ||||| || ||||||    |   || |  ||   ||||||| | ||||||  | |     |  | | | | | |  | || | |    ||||||  || ||||    |||
ATCTTACTATGACATCCGTGCTGCGCGAACTGCTATGCGTGCATTACAAAACAAGCCATTGCGACGGAGGAAACTAGACATTCACTTTTCAATTCCGAAGgttcaaaattgacgttcagccacttgtaagtcatttttg-actttcaaaccatctttatactcatgttttttcc-ttttcttgcctaccac----cag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209722250|gb|BW675070.1|BW675070
EST:     ACAAACCTCTACGGCGCAGGAAACTAGACATTCATTTCTCAATACCAAAG                         GACAATCCATCAGACAAGGATATCAACCAGGGAACATTGGTAGTTTTCAAT
genomic: ACAAACCTCTACGGCGCAGGAAACTAGACATTCATTTCTCAATACCAAAGgttttttaca ... cacatcccagGACAATCCATCAGACAAGGATATCAACCAGGGAACATTGGTAGTTTTCAAT