1 5' 3' | 2 5' 3' | 3 5' 3' |
TATTATAGTTTGTAATGATGAAATTGTTGCTAGATGTCACAACATGGTTCTGAGGAACACAGACCCCACTGCTCATGCAGAAGTCACTGTAATAAGAAAGgttagatgattattaatttgaagccaaataatttccttaaattgctttaaaatgcatattttcttgtagtatatgttggtatttacatttatgcttttct...
species | Glycine max |
transcript | GLYMA09G09430.6 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAGGAACACAGACCCCACTGCTCATGCAGAAGTCACTGTAATAAGAAAG GCTTGTGAAAAGCTAAACCAGATEST: gi|254323218|gb|GR840023.1|GR840023
genomic: TGAGGAACACAGACCCCACTGCTCATGCAGAAGTCACTGTAATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGCTAAACCAGAT
EST: TGAGGAACACAGACCCCACTGCTCATGCAGAAGTCACTGTAATAAGAAAG GCTTGTGAAAAGCTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCTEST: gi|23729280|gb|BU762725.1|BU762725
genomic: TGAGGAACACAGACCCCACTGCTCATGCAGAAGTCACTGTAATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGCTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: TGAGGAACACAGACCCCACTGCTCATGCAGAAGTCACTGTAATAAGAAAG GCTTGTGAAAAGCTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCTEST: gi|15001075|gb|BI321889.1|BI321889
genomic: TGAGGAACACAGACCCCACTGCTCATGCAGAAGTCACTGTAATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGCTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: TGAGGAACACAGACCCCACTGCTCATGCAGAAGTCACTGTAATAAGAAAG GCTTGTGAAAAAGCTAAAEST: gi|9899108|gb|BE608076.1|BE608076
genomic: TGAGGAACACAGACCCCACTGCTCATGCAGAAGTCACTGTAATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAA-GCTAAA
EST: TGAGGAACACAGACCCCACTGCTCATGCAGAAGTCACTGTAATAAGAAAG GCTTGTGAAAAGCTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCTEST: gi|22521736|gb|BU080547.1|BU080547
genomic: TGAGGAACACAGACCCCACTGCTCATGCAGAAGTCACTGTAATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGCTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: TGAGGAACACAGACCCCACTGCTCATGCAGAAGTCACTGTAATAAGAAAG GCTTGTGAAAAGCTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCTEST: gi|254332220|gb|GR843804.1|GR843804
genomic: TGAGGAACACAGACCCCACTGCTCATGCAGAAGTCACTGTAATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGCTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: TGAGGAACACAGACCCCACTGCTCATGCAGAAGTCACTGTAATAAGAAAG GCTTGTGAAAAGCTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCTEST: gi|6482826|gb|AW202038.1|AW202038
genomic: TGAGGAACACAGACCCCACTGCTCATGCAGAAGTCACTGTAATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGCTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: TGAGGAACACAGACCCCACTGCTCATGCAGAAGTCACTGTAATAAGAAAG GCTTGTGAAAAGCTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCTEST: gi|6482422|gb|AW201683.1|AW201683
genomic: TGAGGAACACAGACCCCACTGCTCATGCAGAAGTCACTGTAATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGCTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: TGAGGAACACAGACCCCACTGCTCATGCAGAAGTCACTGTAATAAGAAAG GCTTGTGAAAAGCTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCCACTGCTCATGCAGAAGTCACTGTAATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGCTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTATAGTTTGTAATGATGAAATTGTTGCTAGATGTCACAACATGGTTCTGAGGAACACAGACCCCACTGCTCATGCAGAAGTCACTGTAATAAGAAAGgttagatgattattaatttgaagccaaataatttccttaaattgctttaaaatgcatattttcttgtagtatatgttggtatttacatttatgcttttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA