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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCAAATGTCTCAACCTGTAGTAACTTGACATTGTTACTACTTTGGGTGGTTATGATTGTTCTGGTTTATTACATAAAGACCATGAGTCGTGAGgtaaacaattagaaagttaaaatgaattcagctattccacttcttgagatttgaaattagtattgagggatcttgtatttgtgtttaacattttactaattggctgagacttccactggtgcacgttctgaaatttttcttttaaattttatgcag

Basic information

species Glycine max
transcript GLYMA09G08830.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193590846|gb|FK548191.1|FK548191
EST:     GGGTGGTTATGATTGTTCTGGTTTATTACATAAAGACCATGAGTCGTGAG                         ATTGAAATTTTTGATCCGTTTAATATTCTAGGATTAGAGCCTGGAGCGGCA
genomic: GGGTGGTTATGATTGTTCTGGTTTATTACATAAAGACCATGAGTCGTGAGgtaaacaatt ... ttttatgcagATTGAAATTTTTGATCCGTTTAATATTCTAGGATTAGAGCCTGGAGCGGCA
EST: gi|207761416|gb|GD733759.1|GD733759
EST:     GGGTGGTTATGATTGTTCTGGTTTATTACATAAAGACCATGAGTCGTGAG                         ATTGAAATTTTTGATCCGTTTAATATTCTAGGATTAGAGCCTGGAGCGGCA
genomic: GGGTGGTTATGATTGTTCTGGTTTATTACATAAAGACCATGAGTCGTGAGgtaaacaatt ... ttttatgcagATTGAAATTTTTGATCCGTTTAATATTCTAGGATTAGAGCCTGGAGCGGCA
EST: gi|38193501|gb|CF922707.1|CF922707
EST:     GGGTGGTTATGATTGTTCTGGTTTATTACATAAAGACCATGAGTCGTAAG                         ATTGAAATTTTTGATCCGTTTAATATTCTAGGATTAGAGCCTGGAGCGGCA
genomic: GGGTGGTTATGATTGTTCTGGTTTATTACATAAAGACCATGAGTCGTGAGgtaaacaatt ... ttttatgcagATTGAAATTTTTGATCCGTTTAATATTCTAGGATTAGAGCCTGGAGCGGCA
EST: gi|193339835|gb|FK303222.1|FK303222
EST:     GGGTGGTTATGATTGTTCTGGTTTATTACATAAAGACCATGAGTCGTGAG                         ATTGAAATTTTTGATCCGTTTAATATTCTAGGATTAGAGCCTGGAGCGGCA
genomic: GGGTGGTTATGATTGTTCTGGTTTATTACATAAAGACCATGAGTCGTGAGgtaaacaatt ... ttttatgcagATTGAAATTTTTGATCCGTTTAATATTCTAGGATTAGAGCCTGGAGCGGCA
EST: gi|193702686|gb|FK638726.1|FK638726
EST:     GGGTGGTTATGATTGTTCTGGTTTATTACATAAAGACCATGAGTCGTGAG                         ATTGAAATTTTTGATCCGTTTAATATTCTAGGATTAGAGCCTGGAGCGGCA
genomic: GGGTGGTTATGATTGTTCTGGTTTATTACATAAAGACCATGAGTCGTGAGgtaaacaatt ... ttttatgcagATTGAAATTTTTGATCCGTTTAATATTCTAGGATTAGAGCCTGGAGCGGCA
EST: gi|207713196|gb|GD697180.1|GD697180
EST:     GGGTGGTTATGATTGTTCTGGTTTATTACATAAAGACCATGAGTCGTGAG                         ATTGAAATTTTTGATCCGTTTAATATTCTAGGATTAGAGCCTGGAGCGGCA
genomic: GGGTGGTTATGATTGTTCTGGTTTATTACATAAAGACCATGAGTCGTGAGgtaaacaatt ... ttttatgcagATTGAAATTTTTGATCCGTTTAATATTCTAGGATTAGAGCCTGGAGCGGCA