1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCCGATGGTCAGGATTTCTTCACATCCTACGATGAGGTTTATGACAGTTTTGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATGgtagatttaactttctttatgtcctcttacttttttaattttattttccaaaccaagagttattttgtattttatcgtgatgacaattgtaatttttttt...
species | Glycine max |
transcript | GLYMA09G07530.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTATGGGCTGGCAAGAGAATCTGCTGAGAGGCATCTATGCATATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCAEST: gi|213602164|gb|DB962657.1|DB962657
genomic: CTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATGgtagatttaa ... tgtgttttagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCA
EST: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCAEST: gi|298164132|gb|HO013777.1|HO013777
genomic: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATGgtagatttaa ... tgtgttttagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCA
EST: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCAEST: gi|7685921|gb|AW756569.1|AW756569
genomic: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATGgtagatttaa ... tgtgttttagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCA
EST: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCAEST: gi|213587858|gb|DB959682.1|DB959682
genomic: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATGgtagatttaa ... tgtgttttagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCA
EST: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCAEST: gi|24136576|gb|BU927086.1|BU927086
genomic: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATGgtagatttaa ... tgtgttttagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCA
EST: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCAEST: gi|213596258|gb|DB960215.1|DB960215
genomic: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATGgtagatttaa ... tgtgttttagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCA
EST: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCAEST: gi|23728371|gb|BU762237.1|BU762237
genomic: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATGgtagatttaa ... tgtgttttagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCA
EST: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCAEST: gi|209713719|gb|BW681859.1|BW681859
genomic: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATGgtagatttaa ... tgtgttttagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCA
EST: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCAEST: gi|19268988|gb|BM885244.1|BM885244
genomic: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATGgtagatttaa ... tgtgttttagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCA
EST: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAAGGGAATAGTTCCATTCTGCAEST: gi|16347853|gb|BI973448.1|BI973448
genomic: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATGgtagatttaa ... tgtgttttagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCA
EST: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCA
genomic: TGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATGgtagatttaa ... tgtgttttagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCGATGGTCAGGATTTCTTCACATCCTACGATGAGGTTTATGACAGTTTTGATGCTATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATGgtagatttaactttctttatgtcctcttacttttttaattttattttccaaaccaagagttattttgtattttatcgtgatgacaattgtaatttttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG