Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGTTGGTTGATCAAGTATGGCTTTTGGTTTAGTTCAAAATCATTGAGAGATTGGCCTCTCTTCATGTGCTGgtatgtttgatgaatcccctgaagagtatactatgctttgtgtatccattttgaggattaaatcttaaattgtcatttgacattctggaacgatatctatgcttcgttttcag

Basic information

species Glycine max
transcript GLYMA09G07520.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G07520.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0016g01930.t01 (Vitis vinifera), 5'ss of exon 3
TATGGTTGGTTGATCAAGTATGGCTTTTGGTTTAGTTCAAAATCATTGAGAGATTGGCCTCTCTTCATGTGCTGgta-tgtttgatgaa----tcccctgaagagtat----------actatgctttgtgtatccattttgaggattaaatcttaaattgtcatttgacattctggaacgatatctatgcttcgttttcag------
||||||||||| |||| |  ||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||  | ||    |||| |  |   |||          |  |  | |  ||| |   || |  | | |||||||         |||          |||     | |||  |  | | ||        
TATGGTTGGTTAATCAGGGCTGGTTTTTGGTTTAGTTCAAAATCATTGAGAGATTGGCCACTCTTTATGTGCTGgtaatgtttcctaaacgcttcccttttattctatttgtgaaagaatcaatcgtgatgtgtatcttatttgaaataaatctagtccacctattaattgacacagaataccttttattttctggtctctcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120493969|gb|EH222136.1|EH222136
EST:     TTTTGGTTTAGTTCAAAATCATTGAGAGATTGGCCTCTCTTCATGTGCTG                         TCTTAGTCTTGCCATATTTCCACTTGCTGCCTTTGTTGTGGAAAGGTTGGC
genomic: TTTTGGTTTAGTTCAAAATCATTGAGAGATTGGCCTCTCTTCATGTGCTGgtatgtttga ... tcgttttcagTCTTAGTCTTGCCATATTTCCACTTGCTGCCTTTGTTGTGGAAAGGTTGGC