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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGCTTCTGGGTTTGCTGTTTGAGCGTGGGACATACAACAAGCTCTATAGCTATAGACACCTTATAAATGGGTTTGCAGTTCATCTTTCCCCAGAACAGgtgatgtcttgggttgttatctttttagtttgtactatgatttgattaagagtttaatgattatgcactaatagtgtaaaacaatgtcatccaatcataa...

Basic information

species Glycine max
transcript GLYMA09G06640.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G06640.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G19170.1 (Arabidopsis thaliana), 5'ss of exon 3
CATGCTTCTGGGTTTGCTGTTTGAGCGTGGGACATACAACAAGCTCTATAGCTATAGACACCTTATAAATGGGTTTGCAGTTCATCTTTCCCCAGAACAGgtgatgtcttgggttgttatc-tttttagtttgtactatgatttgattaagagtttaatgattatgcactaatagtgtaaaacaatgtcatccaatcataa
 ||| |||| ||  |||| ||||||   ||  ||||||| ||||| || ||||||| ||||||||||||||| ||||||| |||| |||| || || |||||||    | |  ||   ||| ||| ||  | || ||    ||| ||      ||  |  |||   |  || | | |||                      
TATGATTCTTGGGATGCTCTTTGAGGAAGGATCATACAAAAAGCTTTACAGCTATAAACACCTTATAAATGGATTTGCAGCTCATGTTTCTCCTGAGCAGgtgaaaaatcgatttcagatcatttctaaatagttcttaactttcatgttcccttacactatttcactatatttg-gtag---------------------

upper sequence: GLYMA09G06640.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0103g00550.t01 (Vitis vinifera), 5'ss of exon 3
CATGCTTCTGGGTTTGCTGTTTGAGCGTGGGACATACAACAAGCTCTATAGCTATAGACACCTTATAAATGGGTTTGCAGTTCATCTTTCCCCAGAACAGgtgatgtcttgggttgttatctt--tttagtttgtac-tatg-atttgattaagagttta---atgattatgcactaatagtgtaaaacaatgtcatccaatcataa---------------------------------------------------
|||||| ||    ||||||||||||| |||||| ||||| |||||||| |||||| | || ||||| ||||| |||||||||||| | ||||||||||||||||   ||||||   || | ||  | |  ||  ||  |||  || |   ||    | ||   ||   |||    |||| || || | |||| |  |  | | || |                                                   
CATGCTCCTATCGTTGCTGTTTGAGCATGGGACTTACAAGAAGCTCTACAGCTATCGGCATCTTATTAATGGCTTTGCAGTTCATATATCCCCAGAACAGgtgaaaccttgggcaattcttttgttcttattcatatatatatatatatatatatatatatatatatatatattttaat-gtttacagcaattttctgtattgatgacattactatctttgcattctcattttctaatgaatcccactatattagtag