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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAAGGAATTGAAGCTGCAAGAGATATTGTATGCCTTAGAAGGCCCTGGGTGATGATCAGTGTCAATGATGATAAAGATCTTCATTTTCGTAAGGCTGgtaagttctaattgggcttatttgtattcatatgtcaggatcatcctagattagaaatctagtgatttagtttgatatgcaatgcaaatatagtctggtt...

Basic information

species Glycine max
transcript GLYMA09G04010.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G04010.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G864166_T01 (Zea mays), 5'ss of exon 3
AATGAAGGAATTGAAGCTGCAAGAGATATTGTATG---CCTTAGAAGGCCCTGGGTGATGATCAGTGTCAATGATGAT---AAAGATCTTCATTTTCGTAAGGCTGgtaag----ttctaattggg--cttatttgtattcatatgtcaggatcatcctagattagaa--atctagtg----atttagtttgatatgca-atgcaaatatagtctggtt----------------------------------------------
      || |||||||  |||  |   ||||||       ||  |||||| ||| ||||||| ||||| |||||||||   | |||||||||||| ||||| |||||||||    | ||  || ||   |||| ||| |  |  ||| ||  | | | |||   |  |  || |  |     | |||||||  |    | | | |  |     |  |||                                              
------GGTATTGAAGTAGCAGCATCAATTGTACCAACAGTTCAAAGGCCTTGGCTGATGATTAGTGTTAATGATGATTGCAGAGATCTTCATTTCCGTAAAGCTGgtaagaacatgctgcttaggaaattatctgt-tatacttgttagt-ttaacttagtgcattatcatttgatatcaaaattagtttcctgcttagaagtacttgccaacctgttaacttttgaactctgtcgagtctgaaaaactttgtttattctctag

upper sequence: GLYMA09G04010.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0077g00960.t01 (Vitis vinifera), 5'ss of exon 2
AATGAAGGAATTGAAGCTGCAAGAGATATTGTATGCCTTAGAAGGCCCTGGGTGATGATCAGTGTCAATGATGATAAAGATCTTCATTTTCGTAAGGCTGgtaagttctaattgggcttatttg-----tattcatatgtcaggatcatcctagattagaaatctagtgatttagtttga---tatgcaatgcaaatatagtctggtt
|||||||||||||| || || ||||| |||||    ||| |||| || ||||| ||||||||||| || ||| || |||||||||||||||| || || ||||| | |        ||| |||      |||| |||   ||| || ||       | | |||| ||   | ||  | ||    ||||| | |||    |||      
AATGAAGGAATTGAGGCGGCTAGAGAGATTGTGCCGCTTCGAAGACCTTGGGTAATGATCAGTGTTAACGATAATGAAGATCTTCATTTTCGCAAAGCCGgtaaatgcccccattccttctttactagatattgataaaacagtataattt---gcttgcaatc-agcattgtaaatcgaattcatgcagtacaatgccagtac----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22525423|gb|BU084234.1|BU084234
EST:     GGTGATGATCAGTGTCAATGATGATAAAGATCTTCATTTTCGTAAGGCTG                         AATTTGATCCAGAAGACTGTCCAGCAGACTGTTCACGGCCTTGTGAAAATG
genomic: GGTGATGATCAGTGTCAATGATGATAAAGATCTTCATTTTCGTAAGGCTGgtaagttcta ... ttttgaacagAATTTGATCCAGAAGACTGTCCAGCAGACTGTTCACGGCCTTGTGAAAATG
EST: gi|298188644|gb|HO035337.1|HO035337
EST:     GGTGATGATCAGTGTCAATGATGATAAAGATCTTCATTTTCGTAAGGCTG                         AATTTGATCCAGAAGACTGTCCAGCAGACTGTTCACGGCCTTGTGAAAA
genomic: GGTGATGATCAGTGTCAATGATGATAAAGATCTTCATTTTCGTAAGGCTGgtaagttcta ... ttttgaacagAATTTGATCCAGAAGACTGTCCAGCAGACTGTTCACGGCCTTGTGAAAA
EST: gi|192299535|gb|FG990815.1|FG990815
EST:     GGTGATGATCAGTGTCAATGATGATAAAGATCTTCATTTTCGTAAGGCTG                         AATTTGATCCAGAAGACTGTCCAGCAGACTGTTCACGGCCTTGTGAAAATG
genomic: GGTGATGATCAGTGTCAATGATGATAAAGATCTTCATTTTCGTAAGGCTGgtaagttcta ... ttttgaacagAATTTGATCCAGAAGACTGTCCAGCAGACTGTTCACGGCCTTGTGAAAATG