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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATAGGTTGAGCATTAGTCGTGAGAAATATAGACAAACTAGACTAGAGCAGTACAAAAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAAGgtaaatatgttttgcttggagtttggatgcatttgattagtgattttaaaaatatcgtttcaccctatactttttctacttctcttgtctacag

Basic information

species Glycine max
transcript GLYMA09G02070.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G02070.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s0568g00010.t01 (Vitis vinifera), 5'ss of exon 3
GGATAGGTTGAGCATTAGTCGTGAGAAATATAGACAAACTAGACTAGAGCAGTACAAAAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAAGgtaaatatgttttgcttggagtttggatgcatttgattagtgattttaaaa----atatcgtttcac-cctatactttttctacttctcttgtctacag
||| ||  | |||||    |||||||| || |||| |||||||||||||||||||||||| ||||| ||||||||||| || || |||   || |||||||||   || |||| | | |  | | |  | ||   | | ||  || ||| |    |||   | |||| | | | ||||||||  ||  |||||      
GGAGAGACTTAGCATCTCCCGTGAGAAGTACAGACTAACTAGACTAGAGCAGTACAAAAACTATGAGAACATACCACATTCTGGAGAAGGTTCGGAGAAGgta---atattttccctaggttctagtggtataacact-gtacttataatagtacatactttctcacacttgtcctttttcttatttacttgttag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208249043|gb|GE043658.1|GE043658
EST:     GTACAAAAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAAAG                         GAATGCAAAGC
genomic: GTACAAAAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAA-Ggtaaatatgt ... ttgtctacagGAATGCAAAGC
EST: gi|207708576|gb|GD691910.1|GD691910
EST:     AGTACAAAAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAAG                         GAATGCAAAGC
genomic: AGTACAAAAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAAGgtaaatatgt ... ttgtctacagGAATGCAAAGC