1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGAACCAGTGTCTGAAGCCTGTGCGCAGTTGACTCAGGAGTTCTTTAAGGAGGATACGTTGCGACTGCTTATCAAGTGTCTTCCAAAATTGAATTTGGAGgtagtaaagaaatttatgatagacctcctgatatttgcactgtttgatgctgttagataccctttgtaggattggtatgcttattaagaaataagaatctgggtgatgtgtggaatcacatgtttattttgatgctgtactgcaattgtttactatttggtaacttggagactatgggctttgcag
species | Glycine max |
transcript | GLYMA09G01370.4 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCTTATCAAATGTCTTCCAAAATTGAATTTGGAG GCCAGAAAAGATGCCACTCAAGTTGTTGCAAATTTACAAAGGCAACAGGTTEST: gi|208056876|gb|GD851209.1|GD851209
genomic: GCTTATCAAGTGTCTTCCAAAATTGAATTTGGAGgtagtaaaga ... ggctttgcagGCCAGAAAAGATGCCACTCAAGTTGTTGCAAATTTACAAAGGCAACAGGTT
EST: AGGATACGTTGCGACTGCTTATCAAGTGTCTTCCAAAATTGAATTTGGAG GCCAGAAAAGATGCCACTCAAGTTGTTGCAAATTTACAAAGGCAACAGGTTEST: gi|213599253|gb|DB962290.1|DB962290
genomic: AGGATACGTTGCGACTGCTTATCAAGTGTCTTCCAAAATTGAATTTGGAGgtagtaaaga ... ggctttgcagGCCAGAAAAGATGCCACTCAAGTTGTTGCAAATTTACAAAGGCAACAGGTT
EST: AGGATACGTTGCGACTGCTTATCAAGTGTCTTCCAAAATTGAATTTGGAG GCCAGAAAAGATGCCACTCAAGTTGTTGCAAATTTACAAAGGCAACAGGTTEST: gi|18039695|gb|BM307989.1|BM307989
genomic: AGGATACGTTGCGACTGCTTATCAAGTGTCTTCCAAAATTGAATTTGGAGgtagtaaaga ... ggctttgcagGCCAGAAAAGATGCCACTCAAGTTGTTGCAAATTTACAAAGGCAACAGGTT
EST: AGGACACGTTGCGACTGCTTATCAAATGTCTTCCAAAATTGAATTTGGAG GCCAGAAAAGATGCCACTCAAGTTGTTGCAAATTTACAAAGGCAACAGGTTEST: gi|208200834|gb|GD995659.1|GD995659
genomic: AGGATACGTTGCGACTGCTTATCAAGTGTCTTCCAAAATTGAATTTGGAGgtagtaaaga ... ggctttgcagGCCAGAAAAGATGCCACTCAAGTTGTTGCAAATTTACAAAGGCAACAGGTT
EST: ATCAAATGTCTTCCAAAATTGAATTTGGAG GCCAGAAAAGATGCCACTCAAGTTGTTGCAAATTTACAAAGGCAACAGGTT
genomic: ATCAAGTGTCTTCCAAAATTGAATTTGGAGgtagtaaaga ... ggctttgcagGCCAGAAAAGATGCCACTCAAGTTGTTGCAAATTTACAAAGGCAACAGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAACCAGTGTCTGAAGCCTGTGCGCAGTTGACTCAGGAGTTCTTTAAGGAGGATACGTTGCGACTGCTTATCAAGTGTCTTCCAAAATTGAATTTGGAGgtagtaaagaaatttatgatagacctcctgatatttgcactgtttgatgctgttagataccctttgtaggattggtatgcttattaagaaataagaatctgggtgatgtgtggaatcacatgtttattttgatgctgtactgcaattgtttactatttggtaacttggagactatgggctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG