1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGCCGTTCATCCTTCTGTAGATCCCATTTTGCAAACACAAGAATCGATCCTTGACAAGCTGTGGGAGATAAATGTCAAATCCACTATACTTCTTCTCAAGgtaactagctaacatagtactatcatatagccgaagctaaaagaagaaaagaacaaaatcaatatatgtttcagcacattctcttaatgtaactccatgtgatctgctgaaattgaaattgtagtacggtatgttatccacttcttttgcttatacag
species | Glycine max |
transcript | GLYMA09G01170.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGACAAGCTGTGGGAGATAAATGTCAAATCCACTATACTTCTTCTCAAG GATGCAGCTCCTCACTTGAAGAAGGGTTCTTCTGTTGTTCTCATTEST: gi|151409377|gb|EV279185.1|EV279185
genomic: TTGACAAGCTGTGGGAGATAAATGTCAAATCCACTATACTTCTTCTCAAGgtaactagct ... gcttatacagGATGCAGCTCCTCACTTGAAGAAGGGTTCTTCTGTTGTTCTCATT
EST: TTGACAAGCTGTGGGAGATAAATGTCAAATCCACTATACTTCTTCTCAAG GATGCAGCTCCTCACTTGAAGAAGGGTTCTTCTGTTGTTCTCATTGCCTCAEST: gi|151394603|gb|EV264474.1|EV264474
genomic: TTGACAAGCTGTGGGAGATAAATGTCAAATCCACTATACTTCTTCTCAAGgtaactagct ... gcttatacagGATGCAGCTCCTCACTTGAAGAAGGGTTCTTCTGTTGTTCTCATTGCCTCA
EST: TTGACAAGCTGTGGGAGATAAATGTCAAATCCACTATACTTCTTCTCAAG GATGCAGCTCCTCACTTGAAGAAGGGTTCTTCTGTTGTTCTCATTGCCTCAEST: gi|192310577|gb|FG999236.1|FG999236
genomic: TTGACAAGCTGTGGGAGATAAATGTCAAATCCACTATACTTCTTCTCAAGgtaactagct ... gcttatacagGATGCAGCTCCTCACTTGAAGAAGGGTTCTTCTGTTGTTCTCATTGCCTCA
EST: TTGGCAAGCTGTGGGAGATAAATGTCAAATCCACTATACTTCTTCTCAAG GATGCAGCTCCTCACTTGAAGAAGGGTTCTTCTGTTGTTCTCATTGCCTCAEST: gi|192310576|gb|FG999235.1|FG999235
genomic: TTGACAAGCTGTGGGAGATAAATGTCAAATCCACTATACTTCTTCTCAAGgtaactagct ... gcttatacagGATGCAGCTCCTCACTTGAAGAAGGGTTCTTCTGTTGTTCTCATTGCCTCA
EST: TTGGCAAGCTGTGGGAGATAAATGTCAAATCCACTATACTTCTTCTCAAG GATGCAGCTCCTCACTTGAAGAAGGGTTCTTCTGTTGTTCTCATTGCCTCAEST: gi|151408412|gb|EV278220.1|EV278220
genomic: TTGACAAGCTGTGGGAGATAAATGTCAAATCCACTATACTTCTTCTCAAGgtaactagct ... gcttatacagGATGCAGCTCCTCACTTGAAGAAGGGTTCTTCTGTTGTTCTCATTGCCTCA
EST: TTGACGAGCTGTGGGAGATAAATGTCAAATCCACTATACTTCTTCTCAAG GATGCAGCTCCTCACTTGAAGAAGGGTTCTTCTGTTGTTCTCATTGCCTCAEST: gi|9259974|gb|BE348121.1|BE348121
genomic: TTGACAAGCTGTGGGAGATAAATGTCAAATCCACTATACTTCTTCTCAAGgtaactagct ... gcttatacagGATGCAGCTCCTCACTTGAAGAAGGGTTCTTCTGTTGTTCTCATTGCCTCA
EST: TTG-CAAGCTGTGGGAGATAAATGTCAAATCCACTATACTTCTTCTCAAG GATGCAGCTCCTCACTTGAAGAAGEST: gi|298185958|gb|HO031119.1|HO031119
genomic: T-GACAAGCTGTGGGAGATAAATGTCAAATCCACTATACTTCTTCTCAAGgtaactagct ... gcttatacagGATGCAGCTCCTCACTTGAAGAAG
EST: TTGACAAGCTGTGGGAGATAAATGTCAAATCCACTATACTTCTTCTCAAG GATGCAGCTCCTCACTTGAAGAAGGGTTCTTCTGTTGTTCTCATTGCCTCA
genomic: TTGACAAGCTGTGGGAGATAAATGTCAAATCCACTATACTTCTTCTCAAGgtaactagct ... gcttatacagGATGCAGCTCCTCACTTGAAGAAGGGTTCTTCTGTTGTTCTCATTGCCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCCGTTCATCCTTCTGTAGATCCCATTTTGCAAACACAAGAATCGATCCTTGACAAGCTGTGGGAGATAAATGTCAAATCCACTATACTTCTTCTCAAGgtaactagctaacatagtactatcatatagccgaagctaaaagaagaaaagaacaaaatcaatatatgtttcagcacattctcttaatgtaactccatgtgatctgctgaaattgaaattgtagtacggtatgttatccacttcttttgcttatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT