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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCTCAGCCATGTCACCGGTAACTACACCGCCTTGCAGATGCATCTTGTGACACTAATGCAACAGAACCAGCAGCGAACAGAAAGCACGGAAAATGGGgtacttataaattccaagtattaataattactgcctggtttctttgaattgactttcttttcatttataacagcataaacggtgggttaaatttatgagatgttaataatgataatgttgaaattcag

Basic information

species Glycine max
transcript GLYMA09G00820.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814711|gb|BI786986.1|BI786986
EST:     TGACACTAATGCAACAGAACCAGCAGCGAACAGAAAGCACGGAAAATGGG                         GTTGCTCAGGGAAAGGTTGAGGATAAAAACCATGGTGTTGGTGGAGGAAAG
genomic: TGACACTAATGCAACAGAACCAGCAGCGAACAGAAAGCACGGAAAATGGGgtacttataa ... tgaaattcagGTTGCTCAGGGAAAGGTTGAGGATAAAAACCATGGTGTTGGTGGAGGAAAG
EST: gi|21993769|gb|BQ785297.1|BQ785297
EST:     TGACACTAATGCAACAGAACCAGCAGCGAACAGAAAGCACGGAAAATGGG                         GTTGCTCAGGGAAAGGTTGAGGATAAAAACCATGGTGTTGGTGGAGGAAAG
genomic: TGACACTAATGCAACAGAACCAGCAGCGAACAGAAAGCACGGAAAATGGGgtacttataa ... tgaaattcagGTTGCTCAGGGAAAGGTTGAGGATAAAAACCATGGTGTTGGTGGAGGAAAG
EST: gi|209698051|gb|BW680372.1|BW680372
EST:     TGACACTAATGCAACAGAACCAGCAGCGAACAGAAAGCACGGAAAATGGG                         GTTGCTCAGGGAAAGGTTGAGGATAAAAACCATGGTGTTGGTGGA
genomic: TGACACTAATGCAACAGAACCAGCAGCGAACAGAAAGCACGGAAAATGGGgtacttataa ... tgaaattcagGTTGCTCAGGGAAAGGTTGAGGATAAAAACCATGGTGTTGGTGGA
EST: gi|14990745|gb|BI316418.1|BI316418
EST:     TGACACTAATGCAACAGAACCAGCAGCGAACAGAAAGCACGGAAAATGGG                         GTTGCTCATGGAAAGGTTGAGGATAAAAACCATGGTGTTGGTGGAGGA
genomic: TGACACTAATGCAACAGAACCAGCAGCGAACAGAAAGCACGGAAAATGGGgtacttataa ... tgaaattcagGTTGCTCAGGGAAAGGTTGAGGATAAAAACCATGGTGTTGGTGGAGGA
EST: gi|213614601|gb|DB969531.1|DB969531
EST:     TGACACTAATGCAACAGAACCAGCAGCGAACAGAAAGCACGGAAAATGGG                         GTTGCTCAGGGAAAGGTTGAGGA
genomic: TGACACTAATGCAACAGAACCAGCAGCGAACAGAAAGCACGGAAAATGGGgtacttataa ... tgaaattcagGTTGCTCAGGGAAAGGTTGAGGA
EST: gi|17964331|gb|BM271068.1|BM271068
EST:     TGACACTAATGCAACAGAACCAGCAGCGAACAGAAAGCACGGAAAATGGG                         GTTGCTCAGGGAAAGGTTGAGGATAAAAACCATGGTGTTGGTGGAGGAAAG
genomic: TGACACTAATGCAACAGAACCAGCAGCGAACAGAAAGCACGGAAAATGGGgtacttataa ... tgaaattcagGTTGCTCAGGGAAAGGTTGAGGATAAAAACCATGGTGTTGGTGGAGGAAAG
EST: gi|14205880|gb|BG839558.1|BG839558
EST:     TGACACTAATGCAACAGAACCAGCAGCGAACAGAAAGCACGGAAAATGGG                         GTTGCTCAGGGAAAGGTTGAGGATAAAAACCATGGTGTTGGTGGAGGAAAG
genomic: TGACACTAATGCAACAGAACCAGCAGCGAACAGAAAGCACGGAAAATGGGgtacttataa ... tgaaattcagGTTGCTCAGGGAAAGGTTGAGGATAAAAACCATGGTGTTGGTGGAGGAAAG