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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTCTGCTGCAATTCAATATGGTACTGGAGCAATTTCTGGTTTCTTTAGCAATGACGATGTCAAAGTTGGTGACATAGTTGTAAAGGACCAGgtaatactaattgtcaatccctatttcatttttcttttccttcacaccaacaaagtgtgatgtcagttgagttggcttctttcataatatgttgattaatcaattaacatgaagtatgttttaatcttcattag

Basic information

species Glycine max
transcript GLYMA09G00810.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00810.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G04460.2 (Arabidopsis thaliana), 5'ss of exon 4
GTACTTCTGCTGCAATTCAATATGGTACTGGAGCAATTTCTGGTTTCTTTAGCAATGACGATGTCAAAGTTGGTGACATAGTTGTAAAGGACCAGgtaatactaattgtcaatccctatttcatttttcttttccttcacaccaacaaagtgtgatgtcagttgagttggcttctttcataatatgttgattaatcaattaacatgaagtatgttttaatcttcattag
| |   | ||  | || |  ||||| || || || |||||||||| |||||||||||| ||||| ||||||||||| || ||||| || || ||||||| || | |  |     ||  || ||| ||||      ||||    |   || | |        |  |  |   |     || |                                                
GAAAACCCGCGTCTATCCGCTATGGGACGGGTGCTATTTCTGGTTACTTTAGCAATGATGATGTTAAAGTTGGTGATATTGTTGTGAAAGAGCAGgtaaaacgattcat-----ccgcttacatatttcagaatattcatgtgagttaa-tatctaactgctacatctatatatcaccacag-----------------------------------------------