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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTCAACACCTGACAAAAGCAGATTTAAGCAAGATGTACTTTGGGGGTTTCCAAGTGTTGGACATCAATGGTGTGCAGTGCTTTCTCACACGGACAGGgtatgttttcatgttgtttgctttctgtaacattagcaattcaacttgtaaagtttgtctgagatgtagtaatgttacctgaatttccatcttatatgat...

Basic information

species Glycine max
transcript GLYMA09G00710.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00710.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv10s0116g01540.t01 (Vitis vinifera), 5'ss of exon 2
TTCTTCAACACCTGACAAAAGCAGATTTAAGCAAGATGTACTTTGGGGGTTTCCAAGTGTTGGACATCAATGGTGTGCAGTGCTTTCTCACACGGACAGGgtatgttttcatgttgtttgctttctgtaacattagcaattcaacttgtaaagtttgtctgagatgtagtaatgttacctgaatttccatcttatatgat------
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TTCTTCAACACCTGACAAAAGAGGATTTAAGCAAGTTATTTTTTGGGGAGTTCCAAATCTTGGATATCAACGGAGCAACCTGCTTTCTCACTAGGACAGGgtatagttttccttttctttttttccctttc-ttctcatttcctttccactagttt-----aaaaataataatgggtctgggttgagggacctgattgattgcctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151407431|gb|EV277246.1|EV277246
EST:     TTCCAAGTGTTGGACATCAATGGTGTGCAGTGCTTTCTCACACGGACAGG                         GTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGC
genomic: TTCCAAGTGTTGGACATCAATGGTGTGCAGTGCTTTCTCACACGGACAGGgtatgttttc ... agactttcagGTATACTGGGGAAGATGGATTTGAGATATCAATTCCCTCAGAGAGTGC